API for CoGAPS/CoGAPS
Coordinated Gene Activity in Pattern Sets

Global functions
CoGAPS Man page Source code
CoGAPS-package Man page
CogapsParams-class Man page
CogapsResult-class Man page
GIST.data_frame Man page
GIST.matrix Man page
GIST.result Man page
GIST.uncertainty Man page
GWCoGAPS Man page Source code
binaryA Man page
binaryA,CogapsResult-method Man page
buildReport Man page Source code
calcCoGAPSStat Man page
calcCoGAPSStat,CogapsResult-method Man page
calcGeneGSStat Man page
calcGeneGSStat,CogapsResult-method Man page
calcZ Man page
calcZ,CogapsResult-method Man page
callInternalCoGAPS Man page Source code
checkDataMatrix Man page Source code
cogaps_cpp Source code
cogaps_cpp_from_file Source code
computeGeneGSProb Man page
computeGeneGSProb,CogapsResult-method Man page
corcut Man page Source code
corrToMeanPattern Man page Source code
createSets Man page Source code
distributedCogaps Man page Source code
findConsensusMatrix Man page Source code
gapsCat Man page Source code
getBuildReport_cpp Source code
getClusteredPatterns Man page
getClusteredPatterns,CogapsResult-method Man page
getCorrelationToMeanPattern Man page
getCorrelationToMeanPattern,CogapsResult-method Man page
getGeneNames Man page Source code
getMeanChiSq Man page
getMeanChiSq,CogapsResult-method Man page
getOriginalParameters Man page
getOriginalParameters,CogapsResult-method Man page
getParam Man page
getParam,CogapsParams-method Man page
getRetinaSubset Man page Source code
getSampleNames Man page Source code
getSubsets Man page
getSubsets,CogapsResult-method Man page
getUnmatchedPatterns Man page
getUnmatchedPatterns,CogapsResult-method Man page
getVersion Man page
getVersion,CogapsResult-method Man page
initialize,CogapsParams-method Man page
initialize,CogapsResult-method Man page
ncolHelper Man page Source code
nrowHelper Man page Source code
parseExtraParams Man page Source code
patternMarkers Man page
patternMarkers,CogapsResult-method Man page
patternMatch Man page Source code
plot.CogapsResult Source code
plotPatternMarkers Man page Source code
plotResiduals Man page
plotResiduals,CogapsResult-method Man page
reconstructGene Man page
reconstructGene,CogapsResult-method Man page
run_catch_unit_tests Source code
sampleUniformly Man page Source code
sampleWithAnnotationWeights Man page Source code
sampleWithExplictSets Man page Source code
scCoGAPS Man page Source code
setAnnotationWeights Man page
setAnnotationWeights,CogapsParams-method Man page
setDistributedParams Man page
setDistributedParams,CogapsParams-method Man page
setParam Man page
setParam,CogapsParams-method Man page
startupMessage Man page Source code
stitchTogether Man page Source code
supported Man page Source code
CoGAPS/CoGAPS documentation built on Dec. 3, 2018, 2:06 p.m.