calcGeneGSStat-methods: probability gene belongs in gene set

calcGeneGSStatR Documentation

probability gene belongs in gene set

Description

calculates the probability that a gene listed in a gene set behaves like other genes in the set within the given data set

Usage

calcGeneGSStat(
  object,
  GStoGenes,
  numPerm,
  Pw = rep(1, ncol(object@featureLoadings)),
  nullGenes = FALSE
)

## S4 method for signature 'CogapsResult'
calcGeneGSStat(
  object,
  GStoGenes,
  numPerm,
  Pw = rep(1, ncol(object@featureLoadings)),
  nullGenes = FALSE
)

Arguments

object

an object of type CogapsResult

GStoGenes

data.frame or list with gene sets

numPerm

number of permutations for null

Pw

weight on genes

nullGenes

logical indicating gene adjustment

Value

gene similiarity statistic


CoGAPS/CoGAPS documentation built on March 25, 2024, 11:17 p.m.