setDistributedParams-methods: set the value of parameters for distributed CoGAPS

In CoGAPS/CoGAPS: Coordinated Gene Activity in Pattern Sets

set the value of parameters for distributed CoGAPS

Description

these parameters are interrelated so they must be set together

Usage

setDistributedParams(
  object,
  nSets = NULL,
  cut = NULL,
  minNS = NULL,
  maxNS = NULL
)

## S4 method for signature 'CogapsParams'
setDistributedParams(
  object,
  nSets = NULL,
  cut = NULL,
  minNS = NULL,
  maxNS = NULL
)

Arguments

object	an object of type CogapsParams
nSets	number of sets to break data into
cut	number of branches at which to cut dendrogram used in pattern matching
minNS	minimum of individual set contributions a cluster must contain
maxNS	maximum of individual set contributions a cluster can contain

Value

the modified params object

Examples

 params <- new("CogapsParams")
 params <- setDistributedParams(params, 5)

CoGAPS/CoGAPS documentation built on April 12, 2024, 3:12 a.m.