Files in CshlSiepelLab/ACE
Analysis of CRISPR Essentiality in R
.DS_Store
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
.travis.yml
ACER.Rproj
DESCRIPTION
LICENSE.md
NAMESPACE
R/DataObjClass.R
R/ModelObjClass.R
R/RcppExports.R
R/ResultObjClass.R
R/callGetLLByGene.R
R/callGetLLByGuideFeature.R
R/callGetLLBySample.R
R/debugArgList.R
R/debuggerFunctions.R
R/deriveSampleScaling.R
R/get95Int.R
R/getFileIdx.R
R/getGuideEfficiency.R
R/getLfcDt.R
R/getMasterLib.R
R/optFg.R
R/optGuide.R
R/optSample.R
R/optimizeModelParameters.R
R/removeNullData.R
R/writeResObj.R
README.md
codecov.yml
doc/basic_ACE.R
doc/basic_ACE.Rmd
doc/basic_ACE.pdf
inst/extdata/countData.csv
inst/extdata/masterLibraryCounts.csv
inst/extdata/negCtrlGenes.txt
inst/extdata/sampleAnnotations.txt
man/DataObj.Rd
man/ModelObj.Rd
man/ResultObj.Rd
man/callGetLLByGene.Rd
man/callGetLLBySample.Rd
man/debugArgList.Rd
man/debugCpp.Rd
man/debugData.Rd
man/debugModel.Rd
man/debugRes.Rd
man/deriveSampleScaling.Rd
man/get95Int.Rd
man/getFileIdx.Rd
man/getGuideEfficiency.Rd
man/getLL.Rd
man/getLLNoInit.Rd
man/getLLNoMaster.Rd
man/getLfcDt.Rd
man/getMasterLib.Rd
man/get_nb_cpp.Rd
man/get_norm_countVec.Rd
man/get_pois_countVec.Rd
man/get_pois_muVec.Rd
man/optFg.Rd
man/optGuide.Rd
man/optSample.Rd
man/optimizeModelParameters.Rd
man/removeNullData.Rd
man/writeResObj.Rd
src/.DS_Store
src/.gitignore
src/ACER.so
src/LLfunctions.cpp
src/LLfunctions.h
src/LLfunctions.o
src/RcppExports.cpp
src/RcppExports.o
src/getLL.cpp
src/getLL.o
src/getLLNoInit.cpp
src/getLLNoInit.o
src/getLLNoMaster.cpp
src/getLLNoMaster.o
tests/testthat.R
tests/testthat/test_DataObj.R
tests/testthat/test_LL_functions.R
tests/testthat/test_ModelObj.R
vignettes/.gitignore
vignettes/ace.bib
vignettes/basic_ACE.Rmd
vignettes/pinp.cls
