Man pages for DAPPERstats/gentest
Generalised Fatality Estimator

alogitCompute the anti-logit.
calcMhatCalculate Mhat for a given Mtilde and DWP
checkComponentsCheck if all component terms and interactions are included in...
combinePredsCreate the predictor combination table for a searcher...
countCarcsCount the minimum number of carcasses in the cells
CPdistOptionsProduce the options for the distributions in the CP model
cpLogLikCalculate the negative log-likelihood of a carcass...
cpmFit a single carcass persistence model.
cpmCPCellPlotPlot cell-specific decay curve for carcass persistence
cpmSetRun a set of cpm models based on predictor inputs
cpmSetAICcTabCreate the AICc tables for a set of carcass persistence...
cpmSetFailCheck if all of the cpm models fail
cpmSetFailRemoveRemove failed pkm models
cpmSetSizeFit all possible carcass persistence models across all size...
cpmSetSizeFailCheck if all of the cpm models fail
cpmSetSizeFailRemoveRemove failed cpm models
cpmSetSpecCPCellPlotPlot cell-specific decay curve for carcass persistence
dateToDayConvert calendar date to day from reference
DWPbyCarcassExpand the density weighted proportion table to a value for...
EcbinomCalculates the expected value of a continuous binomial
GenEstGeneralized estimation of fatalities
isNeverDecreasingCheck if a vector is never decreasing
kFillProposePropose a k value if it is not in the model table
kSuggestSuggest a value for k based on a weighted mean of the...
logitCompute the logit.
makeMenuMake a model menu
matchCellsMatch cells between a (potentially) reduced and full model
mockDataCompletely mock example data set
modNamePastePaste the parts of a model's name back together
modNameSplitSplit model names into their components and remove only a...
modTabColNamesCPCreates the names for the Carcass Persistence model table...
modTabColNamesSECreates the names for the Searcher Efficiency model table...
msgModDoneMCreates the M finished message
msgModFailCreates the error message for when no models are fit...
msgModPartialFailCreates the warning message for when only some models are fit...
msgModRunCreates a model running message
msgNobsSECreates the SE data size notification
msgSampleSizeCreates the small sample size warning
pickSizeclassLocate the sizeclass selected by the inputs
pkLogLikCalculate the negative log-likelihood of a searcher...
pkmFit a single searcher efficiency model.
pkmParamPlotPlot parameter box plots for each cell for either p or k
pkmSECellPlotPlot cell-specific decay curve for searcher efficiency
pkmSetRun a set of pkm models based on predictor inputs
pkmSetAICcTabCreate the AICc tables for the searcher efficiency models
pkmSetFailCheck if all of the pkm models fail
pkmSetFailRemoveRemove failed pkm models
pkmSetSizeFit all possible searcher efficiency models across all size...
pkmSetSizeFailCheck if all of the pkm models fail
pkmSetSizeFailRemoveRemove failed pkm models
pkmSetSpecParamPlotPlot parameter box plots for each cell within a model for...
pkmSetSpecSECellPlotPlot cell-specific decay curve for searcher efficiency for a...
plot.cpmPlot results of a single cp model
plot.cpmSetPlot results of a cp model set
plot.pkmPlot results of a single pk model
plot.pkmSetPlot results of a pk model set
ppersistCalculate the probability of persistence to detection
ppersist_loglogisticCalculate the probability of persistence to for a loglogistic
prepPredictorsPrepares predictors based on inputs
prepSizeclassTextPrepare text for size classes
rcpSimulate parameters from a fitted cp model.
rghatSimulate ghat values and arrival intervals for a set of...
rghatCarcassSimulate ghat values and arrival intervals for a carcass from...
rMhatDraw values for Mhat given a ghat and DWP
rMtildeDraw values for Mtilde given a ghat
rpkSimulate p and k parameters from a fitted pk model.
runGenEstLaunch the app
rXtildeDraw values for Xtilde given a ghat
selectDataSelect particular columns from a data set
serverCreate the UI
SEsiCalculate searcher efficiency after some searches
SEsi0Calculate searcher efficiency after some searches for a...
setFigHSet the figure height based on the number of cells
setFigWSet the figure width based on the number of cells
setkFillNeedCreates the kFillNeed text
setkFixUpdate the fixed k value
trueLengthLength of non-missing values in a vector
uiCreate the UI
updateColNames_allUpdates the string of column names that are in all the needed...
updateSizeclassColUpdates the name of the size class column based on available...
updateSizeclassesUpdate the size classes
whichCleanoutDetermine which carcasses were from cleanout searches
yyyymmddConverts the standard Excel date format (m/d/YYYY) to...
DAPPERstats/gentest documentation built on May 3, 2018, 12:04 p.m.