NEWS.md

In DIPnet/fimsR-access: Functions for Fetching 'GeOMe-db' Data

geomedb 2.1

This release fixes some package check issues and broken documentation links

geomedb 2.0

This release adds functionality for fetching fastq files in R from the SRA

• listMarkers renamed to listLoci
• queryFasta renamed to querySanger
• fastqDump: Download or convert fastq data from NCBI Sequence Read Archive in a single thread (Windows compatible)
• fasterqDump: Download or convert fastq data from NCBI Sequence Read Archive using multiple threads
• prefetch: Download data from NCBI Sequence Read Archive in .sra format using FASP or HTTPS protocols

geomedb 1.0

This is a major release, which updates the package to work with the latest GeOMe changes.

• queryMetadata:
  • query across multiple project & all data in GeOMe
  • query syntax has changed and now resembles SQL
  • query results are returned for each entity. No longer a flat table representation

DIPnet/fimsR-access documentation built on Nov. 12, 2022, 2:41 a.m.