LSRA_MCMC_sim: Internal SRA MCMC CPP code
In DLMtool/DLMtool: Data-Limited Methods Toolkit

Rcpp version of R code

LSRA_MCMC_sim(
  nits,
  pars,
  JumpCV,
  adapt,
  parLB,
  parUB,
  R0ind,
  inflind,
  slpind,
  RDind,
  nyears,
  maxage,
  M,
  Mat_age,
  Wt_age,
  Chist_a,
  Umax,
  h,
  CAA,
  CAAadj,
  sigmaR
)

`nits`	number of iterations
`pars`	vector of parameters
`JumpCV`	jump cv vector
`adapt`	adapt vector
`parLB`	lower bounds
`parUB`	upper bounds
`R0ind`	index for R0
`inflind`	index for inflection
`slpind`	index for slope
`RDind`	index for recruitment deviations
`nyears`	number of projection years
`maxage`	maximum age
`M`	Natural mortality
`Mat_age`	A vector of maturity at age
`Wt_age`	A vector of weight at age
`Chist_a`	A vector of historical catch observations (nyears long) going back to unfished conditions
`Umax`	A numeric value representing the maximum harvest rate for any age class (rejection of sims where this occurs)
`h`	steepness of SRR
`CAA`	A matrix nyears (rows) by nages (columns) of catch at age (age 1 to maxage in length)
`CAAadj`	internal parameter
`sigmaR`	A numeric value representing the prior standard deviation of log space recruitment deviations