API for DanielBonnery/JPSMSurv798
X

Global functions
AnnotatedSNPs Source code
BROKEN_test_DNAMultipleAlignment_mask_all_rows Source code
BROKEN_test_DNAMultipleAlignment_mask_some Source code
BROKEN_test_pairwiseAlignment_emptyString Source code
BS Source code
CI.boot Source code
Cube Source code
DELETE Source code
DSS Source code
Detach Source code
Effect.clm Source code
FrankModel Source code Source code
FunctionEnvClass Source code
FunctionEnvNoClass Source code
GET Source code
I.1d Source code
I.1d_v Source code
I.2d Source code
I.2d_v Source code
IFELSE Source code
Kazam Source code
LR.test Source code
LS Source code
Load Source code
POST Source code
Png Source code
R Source code
R_API_naive Source code
R_API_optimised Source code
Rcpp_New_ptr Source code
Rcpp_New_std Source code
Rcpp_New_std_2 Source code
Rcpp_New_std_Fast Source code
Rcpp_New_std_it Source code
Rcpp_New_sugar Source code
Rcpp_New_sugar_noNA Source code
Rgibbs Source code
S3generics Source code
S4_2list Source code
SNPLocations Source code
SpatialMultiPoints Source code
SpatialMultiPointsDataFrame Source code
Square Source code Source code Source code
Srho Source code
TestChars Source code
U Source code
U.eqn Source code
Unload Source code
XStringSetList_append Source code
XStringSetList_constructor Source code
XStringSetList_unlist Source code
abline1 Source code
abline2 Source code
abline3 Source code
abline4 Source code
above_threshold Source code
acomb Source code
adaptFormula Source code
add Source code Source code Source code Source code
add_1000 Source code
add_variable Source code Source code
aft.eqn Source code
ag Source code
agrepBioC Source code
ai Source code
all.EQ Source code
all.equal.XStringSet Source code
all.equal.XStringSetList Source code
all.equal.merMod Source code
allEQ Source code
allFit Source code
allcoefs Source code Source code
alphaChannelSupported Source code Source code Source code
applyKernel Source code Source code Source code Source code
applyPar Source code
ar.series Source code
are.cases Source code
arqss Source code
as.Date.yearmon2 Source code
as.yearmon2 Source code
as.yearmon2.Date Source code
as_latlon Source code
asis_topic Source code
assocplot1 Source code
astyle Source code Source code
avlCheck Source code
axTicks1 Source code
axTicks2 Source code
axTicks3 Source code
axTicks4 Source code
axTicks5 Source code
axis.POSIXct1 Source code
axis.POSIXct2 Source code
axis.POSIXct3 Source code
axis.POSIXct4 Source code
axis.POSIXct5 Source code
axis.POSIXct6 Source code
axis1 Source code
axis2 Source code
axis3 Source code
axis4 Source code
bad_hybrid_handler Source code
bar Source code
barplot1 Source code
barplot10 Source code
barplot11 Source code
barplot2 Source code
barplot3 Source code
barplot4 Source code
barplot5 Source code
barplot6 Source code
barplot7 Source code
barplot8 Source code
barplot9 Source code
baseOpti Source code
base_time Source code
basic_test Source code
benchmark Source code
bind_select_setup Source code
bold Source code Source code
bootstrap_r Source code
box1 Source code
boxIntersect Source code
boxSearch Source code
boxplot.matrix1 Source code
boxplot1 Source code
boxplot2 Source code
boxplot3 Source code
boxplot4 Source code
boxplot5 Source code
boxplot6 Source code
bpl Source code
branch.fun1 Source code
brent Source code
brown.f Source code Source code Source code
brown.g Source code
broydt Source code Source code
broydt.f Source code Source code Source code Source code
broydt.g Source code Source code
bruteForceHat Source code
bt.f Source code
bt.g Source code
build.kdtree Source code
build.models Source code
bxp1 Source code
bxp2 Source code
bxp3 Source code
bxp4 Source code
bxp5 Source code
bxp6 Source code
bxp7 Source code
bxp8 Source code
c.latlon Source code
calc.pi Source code
call_lyx Source code
can_be_combined Source code
cat0 Source code Source code
catTestchisq.sim_p Source code
cb Source code
cbind.data.frame Source code
cdata Source code
cdplot1 Source code
cdplot2 Source code
cdplot3 Source code
cdplot4 Source code
cdplot5 Source code
cdplot6 Source code
cellnas Source code
celltest Source code
cfun Source code Source code Source code
chandraH Source code
check Source code
checkAsp Source code
checkAssayDataCombine Source code
checkData Source code
checkDataFramesEqual Source code
checkElements Source code
checkIdenticalIfNaNsWereNAs Source code
checkLmArmadillo Source code
checkLmGSL Source code
checkMatching Source code
checkSlots Source code
checkSquareMatrix Source code
checkUnchangedPData Source code
checkVarMetadata Source code
check_affinity_fetch Source code
check_affinity_get Source code
check_hybrid_result Source code
check_not_hybrid_result Source code
chen.f Source code Source code
chenl.f Source code
chenl.g Source code
chenl.jac Source code
chenl.res Source code
chippy Source code
chkFixed Source code
chkIMod Source code
chkMEs Source code
client.package Source code
clip1 Source code
clique.community Source code
cm Source code Source code Source code Source code
cmq Source code Source code Source code Source code
collapse_transformer Source code
cols Source code
comb Source code Source code Source code
combine_coercion_types Source code
combine_pair_test Source code
combine_result Source code
comp Source code
compFunc Source code
comp_bin Source code
compare_graph Source code
compare_hits Source code
compile_graph Source code
contour1 Source code
contour2 Source code
contour3 Source code
convertToTest Source code
coplot1 Source code
coplot2 Source code
coplot3 Source code
coplot4 Source code
coplot5 Source code
coplot6 Source code
coplot7 Source code
coplot8 Source code
coplot9 Source code
countStep Source code
createComponentClasses Source code
createCurrentInstances Source code
create_affinity_test_table Source code
create_and_compare_table Source code
create_graph Source code
cross Source code
csimint Source code
csimtest Source code
ct Source code
curve1 Source code
curve2 Source code
curve3 Source code
curve4 Source code
curve5 Source code
curve6 Source code
curve7 Source code
curve8 Source code
cust Source code
cyq.f Source code Source code Source code
cyq.g Source code Source code Source code
cyq.jac Source code Source code Source code
cyq.res Source code Source code Source code
db Source code
dd.inline.rcpp Source code
deg Source code
deg_min Source code
deg_min_color Source code
deltanumeric Source code
describe.col Source code
devfWrap Source code
df_mean Source code
dgaussmix Source code
dgp Source code Source code
dgpX Source code Source code Source code Source code Source code Source code Source code Source code
dgpZ Source code Source code Source code Source code Source code Source code
dgp_aov Source code
dgp_aov1 Source code
dgp_aov2 Source code
dgp_cox_weibull Source code Source code
dict Source code
display Source code
do_bench Source code
do_graphics_test Source code
dotchart1 Source code
dotchart2 Source code
download_result Source code
dropterms Source code
dummy.plot Source code
dummy_grob Source code
dummy_print Source code
dvm Source code Source code
eltAddresses Source code
emoji_transformer Source code
enfun Source code
equal Source code
equal_df Source code
eval_f Source code Source code
eval_f0 Source code Source code
eval_f1 Source code
eval_f_list Source code
eval_g0 Source code Source code
eval_g1 Source code
eval_grad_f Source code Source code
eval_grad_f0 Source code Source code
eval_jac_g0 Source code Source code
exampleArrows Source code
expand_test_path Source code
expect.err Source code Source code
expect_classes Source code
expect_doppelganger Source code
expect_ellipsis Source code
expect_format_equal Source code
expect_groups Source code
expect_hybrid_error Source code
expect_known_latlon_display Source code
expect_length Source code
expect_no_groups Source code
expect_not_hybrid_error Source code
expect_predicate Source code
expo1 Source code
expo3 Source code Source code Source code
extrosbk Source code
eyz Source code
f Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code
f1 Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code
f10 Source code
f2 Source code Source code Source code Source code Source code Source code
f3 Source code
f4 Source code Source code
f5 Source code
f6 Source code
f7 Source code
f8 Source code
f9 Source code
facet_bootstrap Source code
facet_duplicate Source code
facet_trans Source code
fact Source code Source code
feapply Source code
fenced_block Source code Source code Source code
ff Source code
fibR Source code Source code
figset Source code Source code Source code Source code
filter_args Source code
final Source code
findOverlaps_naive Source code
find_cell Source code
firstExample Source code
firstExample_old Source code
firstofmonth Source code
fit Source code
fit_aov Source code
fit_coxme Source code
flb Source code
fleishman Source code
fn Source code Source code
foo Source code Source code Source code Source code Source code Source code Source code
foobar Source code
foobar.character Source code
foobar.numeric Source code
format.latlon Source code
format.pillar_shaft_latlon Source code
formatLine Source code
fourfold1 Source code
fourfold2 Source code
fourfold3 Source code
fourthExample Source code
fourthExample_old Source code
fr Source code Source code Source code
fractionBelow Source code
froth Source code Source code Source code Source code
froth.f Source code
fun Source code Source code Source code Source code Source code Source code
fun1 Source code
fun2 Source code
func Source code
func.v Source code
fy Source code
fy.dnorm Source code
fy.dnorm.wrong Source code
fy.unnorm Source code
g Source code Source code Source code Source code Source code Source code Source code Source code
g0 Source code
g1 Source code Source code
g2 Source code Source code Source code
g3 Source code
gSim Source code
g_grad Source code
gapwidth Source code
gaussmix.grad Source code
gaussmix.mloglik Source code
gendata Source code
genrose.doc Source code Source code
genrose.f Source code Source code Source code
genrose.g Source code Source code Source code
genrose.g0 Source code Source code
genrose.h Source code Source code Source code
geom_chull Source code
geom_simple_point Source code
geom_simple_polygon Source code
get.bestFitToTime Source code
get.children Source code
getBioC Source code
getBioCBundle Source code
getBioCPkgNames Source code
getBioCWidget Source code
getDLURL Source code
getDefaultRep Source code
getDepends Source code
getFileName Source code
getHTMLcontent Source code
getMode Source code
getNBdisp Source code
getPackNames Source code
getPkgDisc Source code
getPkgPat Source code
getRep Source code
get_alien_lang_string Source code
get_graphics_reporter Source code
get_labels_info Source code
get_labels_info.FacetGrid Source code
get_labels_info.FacetWrap Source code
get_labels_matrix Source code
get_lang_strings Source code
get_layout Source code
get_native_lang_string Source code
get_query_overlaps Source code
getinfo Source code
getmaxdelta Source code
getmunsellmap Source code
gimME Source code
github_api Source code Source code Source code Source code Source code Source code
github_pat Source code
give_a_warning Source code
gives_error_or_warning Source code
glmerCtrl.optx Source code
glue_fmt Source code
glue_ji Source code
glue_safely Source code
glue_sh Source code
gm_mean Source code
gr Source code
greater.than Source code
greet Source code Source code Source code
grid.ftable Source code
grid1 Source code
grid2 Source code
group Source code
groups Source code
grr Source code
h Source code Source code
hald Source code
harness Source code
hasInms Source code
hasNext Source code Source code
hasNext.ihasNext Source code Source code
haveIdenticalPools Source code
hbates.f Source code
hbates.g Source code
hbates.jac Source code
hbates.res Source code
hdp Source code Source code Source code
heat.tree Source code
helperFillWithNoise Source code
helperNew Source code
heq Source code
hin Source code
hist.POSIXt1 Source code
hist.POSIXt2 Source code
hist.POSIXt3 Source code
hist1 Source code
hist2 Source code
hist3 Source code
hobbs.f Source code
hobbs.g Source code
hobbs.jac Source code
hobbs.res Source code
ht Source code
html_topic Source code
iblkcol Source code Source code Source code
icombn Source code
icombn.internal Source code
ifilter Source code
iforever Source code Source code
ihasNext Source code Source code
ilimit Source code Source code
image1 Source code
image2 Source code
image3 Source code
image4 Source code
img Source code
incompatible Source code
informationContent Source code
init_scale Source code
installPack Source code
install_phyloseq Source code
intraday.discretise Source code
ipermn Source code
ipermn.internal Source code
iqseq Source code
iquery Source code Source code Source code
irecycle Source code Source code
irep Source code Source code
irep2 Source code
is.integernumber Source code
is.positive Source code
is.weekend Source code Source code
isOddR Source code
isOptimized Source code
isPak Source code
is_vector_s3.latlon Source code
iseq Source code
italic Source code Source code Source code
itimer Source code
ivcoef Source code
ivector Source code Source code Source code Source code Source code Source code Source code
knit_cmd Source code
knit_print.bar Source code
knit_print.data.frame Source code
knit_print.foo Source code
knit_print.tbl_df Source code
kron Source code
large Source code Source code Source code
latlon Source code
layout Source code
layout1 Source code
layout2 Source code
layout3 Source code
layout4 Source code
legend1 Source code
legend10 Source code
legend11 Source code
legend2 Source code
legend3 Source code
legend4 Source code
legend5 Source code
legend6 Source code
legend7 Source code
legend8 Source code
legend9 Source code
limitize Source code
lines1 Source code
list_df Source code
lmArmadillo Source code
lmArmadillo_old Source code
lmGSL Source code
lmGSL_old Source code
lmerCtrl.optx Source code
logLik.rq.process Source code
lump_test Source code Source code
makeData Source code
makeExpressionSetPackage Source code
makePolys Source code
makeVARALL Source code
make_DNAMultipleAlignment Source code
make_Hits_from_q2s Source code
make_Hits_from_s2q Source code
make_boot_graph Source code
mapping Source code Source code
margintest Source code Source code
matchNms Source code
matplot1 Source code
matplot2 Source code
matplot3 Source code
matplot4 Source code
matplot5 Source code
matplot6 Source code
matplot7 Source code
matplot8 Source code
maxfn Source code Source code
mb_summary Source code
meanDif Source code
meansvarestimates Source code
medContr Source code
medContr1 Source code
memory_db Source code
missing1 Source code
modelSelection Source code
mogrify Source code Source code Source code
mogrify_ Source code
mosaicplot1 Source code
mosaicplot2 Source code
mosaicplot3 Source code
mosaicplot4 Source code
mosaicplot5 Source code
mosaicplot6 Source code
move_additional_arguments_section Source code
move_contents_of_usage_section Source code
msubseq Source code
mtext1 Source code
mtext2 Source code
mtryiter Source code
mutate_y Source code Source code
mvrnorm Source code
mvrunif Source code
my.bad.text Source code
my.labs Source code
my.labs2 Source code
my.labs3 Source code
my.node.fun Source code
my.node.fun2 Source code
my.node.fun3 Source code
my.split.labs Source code
my.text Source code
mySumm Source code
mySumm2 Source code
my_dmvnorm Source code
my_dmvnorm_v Source code
my_label Source code Source code
my_label2 Source code Source code
my_mutate Source code Source code
my_plot Source code Source code Source code Source code Source code
my_secret Source code
my_secrets Source code
my_summarise Source code Source code Source code Source code Source code
my_summarise2 Source code
myfct Source code
myfun Source code
myfun1 Source code
myfun2 Source code
mypresid Source code
naive_runmean Source code
naive_runq Source code
naive_runsum Source code
naive_runwtsum Source code
named.equal Source code
neg.sc2.f Source code
neg.sc2.g Source code
negmaxfn Source code
new_bar Source code
new_foo Source code
nextElem.iblkcol Source code
nextfri Source code
nexttue Source code
not.call Source code
notrun Source code
nsf Source code
ntile_h Source code
ntile_h_dplyr Source code
nuniq Source code
obj_size Source code
obj_sizes Source code
obj_sum.POSIXlt Source code
onLoad Source code Source code
os Source code
otherTest1 Source code
otherTest2 Source code
output Source code
overhead_c Source code
overhead_cpp Source code
overlapwidth Source code
p5toNA Source code
pD2Rd Source code
pairs1 Source code
pairs2 Source code
pairs3 Source code
pairs4 Source code
pairs5 Source code
pairs6 Source code
pairs7 Source code
pairs8 Source code
pal Source code
palette1 Source code
palette2 Source code
palette3 Source code
pan Source code
panel.smooth1 Source code
panel.smooth2 Source code
panel.xyref Source code
panel_layout Source code
panel_map_one Source code
par1 Source code
par2 Source code
par3 Source code
par4 Source code
par5 Source code
par6 Source code
parzenHAC Source code
paste0 Source code
patch_method_doc Source code
patch_package_doc Source code
path.to.root Source code Source code Source code
path1 Source code
pause Source code Source code Source code Source code Source code Source code
peek_flag Source code Source code
permn Source code
permn.internal Source code
phi Source code
phiToTheta Source code
piR Source code
pie1 Source code
pie2 Source code
pie3 Source code
pie4 Source code
pie5 Source code
pie6 Source code
pie7 Source code
pillar_shaft.latlon Source code Source code Source code Source code Source code
pkgname.test.stress Source code
plot.SpatialMultiPoints Source code
plot.data.frame1 Source code
plot.data.frame2 Source code
plot.data.frame3 Source code
plot.data.frame4 Source code
plot.data.frame5 Source code
plot.data.frame6 Source code
plot.default1 Source code
plot.default2 Source code
plot.default3 Source code
plot.default4 Source code
plot.design1 Source code
plot.design2 Source code
plot.design3 Source code
plot.design4 Source code
plot.factor1 Source code
plot.factor2 Source code
plot.factor3 Source code
plot.factor4 Source code
plot.foo Source code
plot.formula1 Source code
plot.formula2 Source code
plot.histogram1 Source code
plot.histogram2 Source code
plot.table1 Source code
plot.table2 Source code
plot.table3 Source code
plot.window1 Source code
plot1 Source code Source code
plot2 Source code Source code
plot3 Source code
plot4 Source code
plotG Source code
plotPath Source code Source code
plotRanges Source code
plotRules Source code Source code
plotXplus2Yminus3 Source code
plotfunc Source code
points1 Source code
points2 Source code
points3 Source code
points4 Source code
poissmix.loglik Source code Source code Source code
poisson.sim Source code
polygon1 Source code
polygon2 Source code
polygon3 Source code
polygon4 Source code
polypath1 Source code
poolEltLengths Source code
ppt.test Source code
pranges Source code
pred.xval Source code
prepare_table_with_coercion_rules Source code
prices2returns Source code
primtest2 Source code
print.allfit Source code
print.github_api Source code
print.latlon Source code
print_pairs Source code
printf Source code Source code
psglmm Source code
psglmmSim Source code
pt.test Source code
qsort Source code Source code
quantile.Spatial Source code
query.packages Source code
quos_list Source code
r Source code Source code Source code Source code
rPoisGLMMi Source code
rSim.11 Source code
rSimple Source code
randomDNASequences Source code
randomTerms Source code
rankif Source code Source code
rankvars Source code
raster1 Source code
rate_limit Source code Source code
rbind_all_warn Source code
rbind_list_warn Source code
rcpp_hello_world Source code Source code Source code Source code
readdf Source code
rect1 Source code
rect2 Source code
rect3 Source code
red Source code
rel.diff Source code
remove_authors_section Source code
remove_see_also_section Source code
render Source code
rep_len Source code
replacestr Source code
reset Source code
reset_flags Source code Source code
rgaussmix Source code
rmixedvm Source code Source code
rnd2 Source code
rollcorRle Source code
rollcovRle Source code
rollmeanRle Source code
rollsdRle Source code
rollvarRle Source code
rosbkext Source code
rosbkext.f Source code Source code Source code
rosen Source code
roundtrip_dta Source code
roundtrip_sas Source code
roundtrip_sav Source code
roundtrip_var Source code
roundtrip_xpt Source code
rowMedians2 Source code
rq.fit.panel Source code Source code
rtol Source code
rug1 Source code
run_test Source code
rvm Source code Source code
safe.max Source code
safely_transformer Source code
sc2.f Source code Source code
sc2.g Source code Source code
scramble Source code
screen1 Source code
screen2 Source code
se Source code
secondExample Source code
secondExample_old Source code
sed Source code
segments1 Source code
select_grobs Source code
select_hits Source code
setUp Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code
set_encoding Source code
set_non_utf8_encoding Source code
sha1.formula Source code
sha1.lm Source code
sha1.summary.lm Source code
shell_transformer Source code
showLty Source code
sieve Source code Source code
sieve_ Source code
sim Source code Source code Source code Source code Source code Source code
simfun Source code
simint Source code
simint.default Source code
simint.formula Source code
simint.lm Source code
simplify_nhx_string Source code
sims Source code
simtest Source code
simtest.default Source code
simtest.formula Source code
simtest.lm Source code
simulateReads Source code Source code
skip_if_no_auth Source code
smoothScatter1 Source code
smoothScatter2 Source code
spineplot1 Source code
spineplot2 Source code
spineplot3 Source code
spineplot4 Source code
spineplot5 Source code
spineplot6 Source code
spineplot7 Source code
split.fun Source code Source code Source code
split.fun.width15 Source code
spplot.stgdf Source code
sprintf_transformer Source code
sq Source code
sq.f Source code
sq.g Source code Source code
sqliteDataType Source code
ssq.f Source code
ssq.g Source code
stars1 Source code
stars10 Source code
stars11 Source code
stars12 Source code
stars13 Source code
stars2 Source code
stars3 Source code
stars4 Source code
stars5 Source code
stars6 Source code
stars7 Source code
stars8 Source code
stars9 Source code
stat_chull Source code
stat_density_common Source code
stat_lm Source code Source code Source code
static_help Source code
strings_DNAMultipleAlignment Source code
strip_layout Source code
stripchart1 Source code
stripchart2 Source code
stripchart3 Source code
subs.SpatialTimeGridDataFrame Source code
subscramble Source code
subset2 Source code
subset2_ Source code
sum Source code Source code Source code
sumFun Source code
sumf Source code
summary.SpatialTimeGridDataFrame Source code
summary.allfit Source code
summary.confint.glht Source code
summary.summary.glht Source code
summary.trip Source code
sunflowerplot1 Source code
sunflowerplot2 Source code
sunflowerplot3 Source code
sunflowerplot4 Source code
sunflowerplot5 Source code
sunflowerplot6 Source code
symbols1 Source code
symbols2 Source code
symbols3 Source code
symbols4 Source code
symbols5 Source code
symbols6 Source code
symbols7 Source code
tabular Source code
tail1 Source code
tearDown Source code Source code Source code Source code
test Source code Source code
test.1 Source code
test.all Source code
test.as.MMat Source code
test.as.MRowVec Source code
test.as.MSpMat Source code
test.as.MVec Source code
test.as.SpMat Source code
test.as.Vec Source code
test.asArray Source code
test.asArray2D Source code
test.asMappedSparse.deprecated.double.ColMajor.R Source code
test.asMappedSparse.deprecated.double.RowMajor.R Source code
test.asMappedSparse.double.ColMajor.R Source code
test.asMappedSparse.double.RowMajor.R Source code
test.asMat Source code
test.asSparse.double.ColMajor.R Source code
test.asSparse.double.RowMajor.R Source code
test.asVec Source code
test.attach Source code
test.binary.testRcppPackage Source code
test.expand.palette Source code
test.fastLm Source code
test.fastLm.formula Source code
test.largeDense Source code
test.preschedule Source code
test.smallDense Source code
test.sparseCholesky.R Source code
test.transformationAr1 Source code
test.transformationAr2 Source code
test.wrap.R Source code
test.wrapSparse.double.ColMajor.R Source code
test.wrapSparse.double.R Source code
test.wrapSparse.double.RowMajor.R Source code
test.wrapVectors Source code
test00 Source code
test01 Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code
test02 Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code
test03 Source code Source code Source code Source code Source code Source code
test04 Source code Source code Source code Source code
test05 Source code
test06 Source code
test07 Source code
test08 Source code
test09 Source code
test10 Source code
test11 Source code
test12 Source code
testAPI Source code
testAddTextNotes Source code
testAnnotatedDataFrameCombine Source code
testAnnotatedDataFrameDimnames Source code
testAnnotatedDataFrameFrom Source code
testAssayDataCombine Source code
testAssayDataCombineRows Source code
testAssayDataElement Source code
testAssayDataGets Source code
testAssayDataNew_named_dims Source code
testAssayDataReplacement Source code
testBadInitializeArugments Source code
testChannel Source code
testChannelNames_replace Source code
testCheckData_S3ExtendedDataFrame Source code
testClassVersion Source code
testClassVersionCompare Source code
testClassVersionReplace Source code
testClassVersionSubset Source code
testCombineEsetSubclasses Source code
testCombineFeatureData Source code
testCombineOne Source code
testCombineRows Source code
testCombineThree Source code
testCombineTwo Source code
testCreateClass Source code
testDevelInstanceArchived Source code
testDevelInstanceIsCurrent Source code
testDifferentSampleNames Source code
testDimLabels Source code
testDollar Source code
testEmptyCombine Source code
testEsetUnsafeSetSlot Source code
testEsetfeatureDataAccess Source code
testExprs Source code
testExprsReplacement Source code
testExtraSlotClassInitialize1 Source code
testExtraSlotClassInitialize2 Source code
testExtraSlotClassInitialize3 Source code
testExtraSlotClassInitialize4 Source code
testExtraSlotExpressionClassInitialize1 Source code
testExtraSlotExpressionClassInitialize2 Source code
testExtraSlotExpressionClassInitialize3 Source code
testFeatureNamesReplace Source code
testFn0 Source code
testFn0_v Source code
testFn1 Source code
testFn1_v Source code
testFn2 Source code
testFn2_v Source code
testFn3 Source code
testFn3_v Source code
testFn4 Source code
testFn4_v Source code
testFn5 Source code
testFn5_v Source code
testFn6 Source code
testFn6_v Source code
testFn7 Source code
testFn7_v Source code
testHarmonizeAssayDataDimnames Source code
testInitializeWithNames Source code
testIsCurrent Source code
testIsVersioned Source code
testMetadataFactors Source code
testMyVirtualBaseClass.getX Source code
testMyVirtualBaseClass.setX Source code
testNColSubclasses Source code
testNew Source code Source code
testNew2 Source code
testNew3 Source code
testNew4 Source code
testNew5 Source code
testNew5a Source code
testNew6 Source code
testNewCovariate Source code
testNewCovariateOnEmptyADF Source code
testNewSubclassCreation Source code
testNewValidSubclasses Source code
testNewVersioned Source code
testNewWithVarMetadata Source code
testNoSharedCols Source code
testOtherSlots Source code
testPersp Source code
testPersp1 Source code
testPersp2 Source code
testPersp3 Source code
testPersp4 Source code
testPhenoDataFactors Source code
testPreallocSubclasses Source code
testReplaceCovariates Source code
testSampleNames Source code
testSampleNamesUpdate Source code
testSelectChannels Source code
testSelectChannelsCommonPhenoData Source code
testSetAs Source code
testShow Source code
testSnpSetAccessors Source code
testStorageMode Source code
testSubset2 Source code
testSubsetEsetSubclasses Source code
testUnsafeSetSlotInSlotAssignment1 Source code
testUnsafeSetSlotInSlotAssignment2 Source code
testUpdateESetMisc Source code
testUpdateExpressionSet Source code
testUpdateMiscPreviousInstances Source code
testUpdateObjectToDefaults Source code
testUpdateObjectToSetClass Source code
testUpdatePreviousExpressionSet Source code
testValidation Source code
testVarMetadataAssign Source code
test_AAStringSetList_append Source code
test_AAStringSetList_constructor Source code
test_AAStringSetList_unlist Source code
test_AtomicList_GroupGenerics Source code
test_AtomicList_character Source code
test_AtomicList_constructors Source code
test_AtomicList_general Source code
test_AtomicList_logical Source code
test_AtomicList_numerical Source code
test_DNAMultipleAlignment_empty Source code
test_DNAMultipleAlignment_named Source code
test_DNAMultipleAlignment_unnamed Source code
test_DNAStringSetList_append Source code
test_DNAStringSetList_constructor Source code
test_DNAStringSetList_showAsCell Source code
test_DNAStringSetList_unlist Source code
test_DNAStringSet_combining Source code
test_DNAStringSet_compaction Source code
test_DNAStringSet_constructor Source code
test_DNAStringSet_showAsCell Source code
test_DNAStringSet_subsetting Source code
test_DNAStringSet_unlist Source code
test_DNAStringSet_width Source code
test_DataFrameList_construction Source code
test_DataFrameList_replace Source code
test_DataFrameList_subset Source code
test_DataFrameList_transform Source code
test_DataFrame_Setter Source code
test_DataFrame_annotation Source code
test_DataFrame_coerce Source code
test_DataFrame_combine Source code
test_DataFrame_construction Source code
test_DataFrame_dimnames_replace Source code
test_DataFrame_droplevels Source code
test_DataFrame_looping Source code
test_DataFrame_replace Source code
test_DataFrame_splitting Source code
test_DataFrame_subset Source code
test_DataFrame_transform Source code
test_DataTable_basic Source code
test_DataTable_subset Source code
test_FilterRules_active Source code
test_FilterRules_annotation Source code
test_FilterRules_append Source code
test_FilterRules_construct Source code
test_FilterRules_subset Source code
test_HitsList_as_matrix Source code
test_Hits_coercion Source code
test_Hits_constructor Source code
test_IRangesList_annotation Source code
test_IRangesList_construction Source code
test_IRanges_annotation Source code
test_IRanges_combine Source code
test_IRanges_coverage Source code
test_IRanges_intersect Source code
test_IRanges_names Source code
test_IRanges_pgap Source code
test_IRanges_pintersect Source code
test_IRanges_psetdiff Source code
test_IRanges_punion Source code
test_IRanges_setdiff Source code
test_IRanges_union Source code
test_List_annotation Source code
test_List_apply Source code
test_List_as.data.frame Source code
test_List_combine Source code
test_List_extraction Source code
test_List_funprog Source code
test_List_replace Source code
test_List_replace_names Source code
test_List_subset Source code
test_List_unlist Source code
test_MIAME_construction Source code
test_NCList Source code
test_NCLists Source code
test_Pairs Source code
test_PartitioningByEnd Source code
test_PartitioningByEndOrWidth_NG_supplied Source code
test_PartitioningByWidth Source code
test_RangesList_as_data_frame Source code
test_RangesList_as_list Source code
test_RangesList_construction Source code
test_RangesList_setops Source code
test_RangesList_subset Source code
test_Ranges_adjacency Source code
test_Ranges_distance Source code
test_Ranges_distanceToNearest Source code
test_Ranges_isDisjoint Source code
test_Ranges_nearest Source code
test_Ranges_order Source code
test_Ranges_pcompare Source code
test_RleList_methods Source code Source code
test_RleViews Source code
test_RleViewsList Source code
test_Rle_Integer_overflow Source code
test_Rle_character Source code
test_Rle_coercion Source code
test_Rle_construction Source code
test_Rle_factor Source code
test_Rle_general Source code Source code
test_Rle_groupGeneric Source code
test_Rle_logical Source code
test_Rle_numerical Source code
test_Rle_replace Source code
test_Rle_runmean Source code
test_Rle_runq_integer Source code
test_Rle_runq_real Source code
test_Rle_runsum_integer Source code
test_Rle_runsum_real Source code
test_Rle_runwtsum_integer Source code
test_Rle_runwtsum_real Source code
test_Rle_sort Source code
test_Rle_table Source code
test_SplitDataFrameList_as.data.frame Source code
test_SplitDataFrameList_construction Source code
test_SplitDataFrameList_replace Source code
test_SplitDataFrameList_subset Source code
test_Vector_merge Source code
test_XDoubleViews_equality Source code
test_XDoubleViews_viewMaxs Source code
test_XDoubleViews_viewMeans Source code
test_XDoubleViews_viewMins Source code
test_XDoubleViews_viewSums Source code
test_XDoubleViews_viewWhichMaxs Source code
test_XDoubleViews_viewWhichMins Source code
test_XDouble_slice Source code
test_alphabet Source code
test_arbitrary_selection Source code
test_basic_extract Source code
test_biocinstallRepos_named_repositories Source code
test_biocinstallRepos_noNA_repositories Source code
test_biocinstallRepos_order Source code
test_cache_basic Source code
test_cache_infunc Source code
test_circularity Source code
test_cmd Source code
test_combine_3df Source code
test_combine_df Source code
test_combine_df_AsIs Source code
test_combine_df_ColNamesSuffix Source code
test_combine_df_Empty Source code
test_combine_df_NoCol Source code
test_combine_df_NoCommonCols Source code
test_combine_df_NoRow Source code
test_combine_df_OneRow Source code
test_combine_df_POSIXct Source code
test_combine_df_WithNamedArgs Source code
test_combine_df_preserveNumericRows Source code
test_combine_mat Source code
test_combine_mat_DifferentModes Source code
test_comparison Source code
test_constructors Source code
test_disjoin_Ranges Source code
test_disjoin_RangesList Source code
test_disjointBins_Ranges Source code
test_ellipsis_forwarding_for_Extremes Source code
test_ellipsis_forwarding_for_mapply Source code
test_ellipsis_forwarding_for_order Source code
test_ellipsis_forwarding_for_paste Source code
test_esApply_base Source code
test_esApply_global_args Source code
test_esApply_lexical_scope Source code
test_esApply_local_scope Source code
test_expand Source code
test_extractList Source code
test_extract_all_types Source code
test_extract_bad_inner Source code
test_extract_from_empty Source code
test_extract_ranges_from_Rle Source code
test_findOverlaps_NCList Source code
test_findOverlaps_NCList_arbitrary Source code
test_findOverlaps_NCList_special_types Source code
test_findOverlaps_NCList_with_circular_space Source code
test_findOverlaps_NCList_with_filtering Source code
test_findOverlaps_NCLists Source code
test_findOverlaps_NCLists_with_circular_space Source code
test_findOverlaps_Ranges Source code
test_findPalindromes_on_non_nucleotide_sequence Source code
test_findPalindromes_on_nucleotide_sequence Source code
test_flank_Ranges Source code
test_flank_RangesList Source code
test_function Source code
test_gaps_Ranges Source code
test_gaps_RangesList Source code
test_getContribUrl_exist Source code
test_hybrid Source code
test_length Source code
test_map_positions_to_runs Source code
test_map_ranges_to_runs Source code
test_matchConstantWidth Source code
test_matchVariableWidth Source code
test_narrow_Ranges Source code
test_narrow_RangesList Source code
test_package_filter_masked Source code
test_package_filter_suppress_updates Source code
test_package_filter_unwriteable Source code
test_pairwiseAlignment_backToBackIndel Source code
test_pairwiseAlignment_editDistance Source code
test_pairwiseAlignment_emptyLocalAlign Source code
test_pairwiseAlignment_fixedSubstitutionMatrix Source code
test_pairwiseAlignment_gappedLocalAlign Source code
test_pairwiseAlignment_qualityScoring Source code
test_pairwiseAlignment_zeroOpening Source code
test_palindromeArmLength Source code
test_pdictConstantWidth Source code
test_pdictVariableWidth Source code
test_promoters Source code
test_range_Ranges Source code
test_range_RangesList Source code
test_reduce_Ranges Source code
test_reduce_RangesList Source code
test_reflect_Ranges Source code
test_regroupBySupergroup Source code
test_relist Source code
test_relistToClass Source code
test_remapHits Source code
test_reposType Source code
test_resize_Ranges Source code
test_resize_RangesList Source code
test_restrict_Ranges Source code
test_restrict_RangesList Source code
test_sheet Source code
test_shift_Ranges Source code
test_simplify_extract Source code
test_simplify_extract_all_types Source code
test_simplify_fails_extract Source code
test_slidingWindows Source code
test_splitAsList Source code Source code
test_subseq Source code
test_subsetByOverlaps_Ranges Source code
test_subsetting Source code
test_tile Source code
test_twoWayAlphabetFrequency Source code
test_unsplit Source code
test_updateObject_S4 Source code
test_updateObject_defaults Source code
test_updateObject_env Source code
test_updateObject_list Source code
test_updateObject_refClass Source code
test_updateObject_setClass Source code
test_useDevel Source code
test_writeable_biocLite Source code
test_zoom_Ranges Source code
testireaddf Source code
testis.test Source code
testreaddf Source code
testrunTest Source code
testsvSuite Source code
testsvSuiteList Source code
testsvTest Source code
text Source code
text1 Source code
text2 Source code
text3 Source code
text4 Source code
thirdExample Source code
thirdExample_old Source code
threshold Source code Source code
threshold_x Source code Source code
timeLmArmadillo Source code
timeLmGSL Source code
times Source code Source code Source code
title1 Source code
title2 Source code
title3 Source code
title4 Source code
tmpf Source code Source code Source code Source code
tmpf2 Source code
tmpplot Source code
to4sec Source code
tostr Source code
transpose_hits Source code
trig.f Source code Source code
trigexp Source code Source code Source code
trip.default Source code
troesch Source code Source code
try.random.pl Source code
try.ring.pl Source code
try.rr.pl Source code
tune Source code
typeI Source code
type_sum.latlon Source code
unclass_XStringSet Source code
units1 Source code
unlikelyTest Source code
unzip_xlsx Source code
vFrank Source code
valley Source code
valley.f Source code Source code
varsrs Source code
varsrsest Source code
vcapply Source code
vcov.geeglm Source code
vcov.lmrob Source code
vecfunc Source code
vmmix.loglik Source code Source code
w Source code
with_non_utf8_encoding Source code
workflowInstall Source code
workingWeights Source code
writeSpec Source code
writeTest Source code
writedf Source code
ws.paper Source code
xml_topic Source code
xspline1 Source code
xspline2 Source code
xspline3 Source code
xsplineTest Source code
zip_xlsx Source code
DanielBonnery/JPSMSurv798 documentation built on Sept. 27, 2018, 3:23 p.m.