Files in DavisLaboratory/singscore
Rank-based single-sample gene set scoring method
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/generatNullGeneric.R
R/multiScoreGeneric.R
R/permuTest.R
R/plot.R
R/plotRankDensityGeneric.R
R/rankAndScoring.R
R/rankGenesGeneric.R
R/simpleScoreGeneric.R
R/singscore.R
R/stableGenes.R
R/sysdata.rda
README.md
_pkgdown.yml
data/scoredf_ccle_epi.rda
data/scoredf_ccle_mes.rda
data/scoredf_tcga_epi.rda
data/scoredf_tcga_mes.rda
data/tgfb_expr_10_se.rda
data/tgfb_gs_dn.rda
data/tgfb_gs_up.rda
data/toy_expr_se.rda
data/toy_gs_dn.rda
data/toy_gs_up.rda
inst/CITATION
inst/REFERENCES.bib
man/figures/logo.png
man/generateNull.Rd
man/generateNull_intl.Rd
man/getPvals.Rd
man/getStableGenes.Rd
man/multiScore.Rd
man/plotDispersion.Rd
man/plotNull.Rd
man/plotRankDensity.Rd
man/plotRankDensity_intl.Rd
man/plotScoreLandscape.Rd
man/projectScoreLandscape.Rd
man/rankGenes.Rd
man/scoredf_ccle_epi.Rd
man/scoredf_ccle_mes.Rd
man/scoredf_tcga_epi.Rd
man/scoredf_tcga_mes.Rd
man/simpleScore.Rd
man/singscore.Rd
man/tgfb_expr_10_se.Rd
man/tgfb_gs_dn.Rd
man/tgfb_gs_up.Rd
man/toy_expr_se.Rd
man/toy_gs_dn.Rd
man/toy_gs_up.Rd
tests/testthat.R
tests/testthat/test-generateNull.R
tests/testthat/test-getPvals.R
tests/testthat/test-getStableGenes.R
tests/testthat/test-multiSingscore.R
tests/testthat/test-plotDis.R
tests/testthat/test-plotRankDens.R
tests/testthat/test-plotScoreLandscape.R
tests/testthat/test-projectScoreLandscape.R
tests/testthat/test-rank.R
tests/testthat/test-scoring.R
vignettes/singscore.Rmd
