Files in DavisLaboratory/singscore
Rank-based single-sample gene set scoring method

.gitignore
DESCRIPTION
NAMESPACE
NEWS.md R/generatNullGeneric.R R/permuTest.R R/plot.R R/plotRankDensityGeneric.R R/rankAndScoring.R R/rankGenesGeneric.R R/simpleScoreGeneric.R R/singscore.R README.md
_pkgdown.yml
data/scoredf_ccle_epi.rda
data/scoredf_ccle_mes.rda
data/scoredf_tcga_epi.rda
data/scoredf_tcga_mes.rda
data/tgfb_expr_10_se.rda
data/tgfb_gs_dn.rda
data/tgfb_gs_up.rda
data/toy_expr_se.rda
data/toy_gs_dn.rda
data/toy_gs_up.rda
docs/articles/index.html
docs/articles/singscore.html
docs/articles/singscore_files/figure-html/loadCCLE-1.png
docs/articles/singscore_files/figure-html/loadTCGA-1.png
docs/articles/singscore_files/figure-html/plotNull1-1.png
docs/articles/singscore_files/figure-html/plotNull2-1.png
docs/articles/singscore_files/figure-html/plotds-1.png
docs/articles/singscore_files/figure-html/plotdt-1.png
docs/articles/singscore_files/figure-html/projectScore-1.png
docs/articles/singscore_files/figure-html/projectScore2-1.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/favicon.ico
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/figures/logo.png
docs/reference/generateNull.html
docs/reference/generateNull_intl.html
docs/reference/getPvals.html
docs/reference/index.html
docs/reference/plotDispersion-1.png
docs/reference/plotDispersion.html
docs/reference/plotNull-1.png
docs/reference/plotNull-2.png
docs/reference/plotNull.html
docs/reference/plotRankDensity-1.png
docs/reference/plotRankDensity.html
docs/reference/plotRankDensity_intl.html
docs/reference/plotScoreLandscape-1.png
docs/reference/plotScoreLandscape.html
docs/reference/projectScoreLandscape-1.png
docs/reference/projectScoreLandscape.html
docs/reference/rankExpr.html
docs/reference/rankGenes.html
docs/reference/scoredf_ccle_epi.html
docs/reference/scoredf_ccle_mes.html
docs/reference/scoredf_tcga_epi.html
docs/reference/scoredf_tcga_mes.html
docs/reference/simpleScore.html
docs/reference/singscore.html
docs/reference/singscoring.html
docs/reference/singscoringOneGS.html
docs/reference/tgfb_expr_10_se.html
docs/reference/tgfb_gs_dn.html
docs/reference/tgfb_gs_up.html
docs/reference/toy_expr_se.html
docs/reference/toy_gs_dn.html
docs/reference/toy_gs_up.html
inst/REFERENCES.bib
man/figures/logo.png
man/generateNull.Rd man/generateNull_intl.Rd man/getPvals.Rd man/plotDispersion.Rd man/plotNull.Rd man/plotRankDensity.Rd man/plotRankDensity_intl.Rd man/plotScoreLandscape.Rd man/projectScoreLandscape.Rd man/rankExpr.Rd man/rankGenes.Rd man/scoredf_ccle_epi.Rd man/scoredf_ccle_mes.Rd man/scoredf_tcga_epi.Rd man/scoredf_tcga_mes.Rd man/simpleScore.Rd man/singscore.Rd man/singscoring.Rd man/singscoringOneGS.Rd man/tgfb_expr_10_se.Rd man/tgfb_gs_dn.Rd man/tgfb_gs_up.Rd man/toy_expr_se.Rd man/toy_gs_dn.Rd man/toy_gs_up.Rd tests/testthat.R tests/testthat/test-generateNull.R tests/testthat/test-getPvals.R tests/testthat/test-plotDis.R tests/testthat/test-plotRankDens.R tests/testthat/test-plotScoreLandscape.R tests/testthat/test-projectScoreLandscape.R tests/testthat/test-rank.R tests/testthat/test-scoring.R vignettes/singscore.Rmd
DavisLaboratory/singscore documentation built on Oct. 15, 2018, 8:59 a.m.