getGenomeAlignment: Get Whole Genome Alignment Function

Description Usage Arguments Value Examples

View source: R/getGenomeAlignment.R

Description

The function to obtain the list of orthologs for 2 whole genomes.

Usage

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getGenomeAlignment(genome_id1, genome_id2, chr1 = NULL, chr2 = NULL,
  per_page = NULL, rel_type = NULL)

Arguments

genome_id1

an identifier for the first genome, which can be either its taxon id or UniProt species code

genome_id2

an an identifier for the second genome, which can be either its taxon id or UniProt species code

chr1

the chromosome of interest for the first genome

chr2

the chromosome of interest for the second genome

per_page

the number of instances to be returned or 'all'. default is set to a 100.

rel_type

the pairs relationship type

Value

a dataframe containing information about both the entries in the orthologous pair and their relationship

Examples

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getGenomeAlignment(genome_id1="YEAST",genome_id2="ASHGO")
getGenomeAlignment(genome_id1="YEAST",genome_id2="ASHGO",chr1="1")

DessimozLab/OmaDB documentation built on Dec. 6, 2018, 2:27 a.m.