tests/testthat/test_suite_paths.R

context('suite file providers')

test_that("spek paths exist for each suite's initial stage.",{
  spek_paths <- lapply(list_suite_names(), get_spek_path)
  paths_exists <- sapply(spek_paths, file.exists)
  expect_true(all(paths_exists))
})

test_that("spek path exists for suite candidate stage", {
  skip('pending issue 13')
  spek_path <- get_spek_path("mtx", stage="candidates")
  expect_true(file.exists(spek_path))
})

test_that('data suite paths exist for each suite.',{
  data_paths <- lapply(list_suite_names(), get_data_path)
  paths_exists <- sapply(data_paths, file.exists)
  expect_true(all(paths_exists))

})

test_that('annotations paths exist for each suite.',{
  anno_paths <- lapply(list_suite_names(), get_annotations_path)
  paths_exists <- sapply(anno_paths, file.exists)
  expect_true(all(paths_exists))
})

test_that('list suite names reads from package constants',{
  result <- list_suite_names()
  expect_identical(result, SE$SUITE_NAMES)
})

test_that('Error on bad suite name',{
  expect_error(get_annotations_path('foo'), SE$UNRECOGNIZED_NAME, fixed=T)
  expect_error(get_data_path('foo'), SE$UNRECOGNIZED_NAME, fixed=T)
  expect_error(get_spek_path('foo'), SE$UNRECOGNIZED_NAME, fixed=T)
})
Display-Lab/spekex documentation built on Nov. 23, 2020, 12:32 a.m.