Files in EMSL-Computing/fticRanalysis
Analysis and visualization tools for FT-MS data

.Rbuildignore

.covrignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/test-coverage.yaml

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/applyFilt.R R/as.CoreMSData.R R/as.ftmsData.R R/assign_class.R R/assign_elemental_composition.R R/assign_mf.R R/attributes_methods.R R/calc_aroma.R R/calc_dbe.R R/calc_element_ratios.R R/calc_gibbs.R R/calc_kendrick.R R/calc_nosc.R R/classesPlot.R R/colname_methods.R R/combinePeaksWithSameFormula.R R/comparisonMatrix.R R/compound_calcs.R R/concat.R R/conf_filter.R R/conf_filter_dt.R R/coreMSDataToFtmsData.R R/data.R R/densityCognostics.R R/densityPlot.R R/divideByGroup.R R/divideByGroupComparisons.R R/divideBySample.R R/edata_replace.R R/edata_transform.R R/emeta_filter.R R/filter_plot_methods.R R/filter_summary_methods.R R/formula_filter.R R/getModuleName.R R/getPrincipalCoordinates.R R/getVanKrevelenCategories.R R/group_designation.R R/group_summary_functions.R R/heatmap.R R/kendrickCognostics.R R/kendrickPlot.R R/mapCompoundsToModules.R R/mapCompoundsToReactions.R R/mapPeaksToCompounds.R R/mass_error_plot.R R/mass_filter.R R/molecule_filter.R R/numPeaksPlot.R R/panelFunctionGenerator.R R/parseModuleReaction.R R/parse_mf.R R/plot.CoreMSData.R R/plot.confFilt.R R/plot.peakIcrData.R R/plotPrincipalCoordinates.R R/plotlyHeatmap.R R/print.R R/read_CoreMS_data.R R/scatterPlot.R R/subset.R R/summarizeGroupComparisons.R R/summarizeGroups.R R/summary.R

R/sysdata.rda

R/transformation_counts.R R/unique_mf_assignment.R R/uniqueness_functions.R R/utils-pipe.R R/vanKrevelenCognostics.R R/vanKrevelenPlot.R R/vignette_interactivity_between_plots.R README.md

_pkgdown.yml

data-raw/construct_data.R

data-raw/example12T_data.csv

data-raw/example12T_metadata.csv

data/element_names.rda

data/exampleCoreMSData.rda

data/examplePeakData.rda

data/exampleProcessedPeakData.rda

data/ftms12T_edata.rda

data/ftms12T_emeta.rda

data/ftms12T_fdata.rda

pkgdown-template/footer.html

tests/by_hand_tests/README.txt

tests/by_hand_tests/test_densityPlot.R tests/by_hand_tests/test_filter_plots.R tests/by_hand_tests/test_function_correctness.R tests/by_hand_tests/test_kendrick_plots.R tests/by_hand_tests/test_peakIcrData_plots.R tests/by_hand_tests/test_plotPrincipalCoordinates.R tests/by_hand_tests/test_scatterplots.R tests/by_hand_tests/test_trelliscope.R tests/by_hand_tests/test_vankrevelen_plots.R tests/testthat.R

tests/testthat/example_data1.csv

tests/testthat/example_data2.csv

tests/testthat/example_data3.csv

tests/testthat/example_data_noX1.csv

vignettes/ex_data1.csv

vignettes/ex_data2.csv

vignettes/ex_data3.csv

vignettes/ex_data4.csv

vignettes/ex_data5.csv

vignettes/ex_data6.csv

vignettes/ftmsRanalysis.Rmd vignettes/kendrick_plots.Rmd vignettes/mapping_to_metacyc.Rmd vignettes/read_CoreMS_data.Rmd vignettes/van_krevelen_plots.Rmd

EMSL-Computing/fticRanalysis documentation built on March 23, 2024, 8:36 p.m.

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EMSL-Computing/fticRanalysis
Analysis and visualization tools for FT-MS data

Files in EMSL-Computing/fticRanalysis
Analysis and visualization tools for FT-MS data

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EMSL-Computing/fticRanalysis Analysis and visualization tools for FT-MS data

Files in EMSL-Computing/fticRanalysis Analysis and visualization tools for FT-MS data

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EMSL-Computing/fticRanalysis
Analysis and visualization tools for FT-MS data

Files in EMSL-Computing/fticRanalysis
Analysis and visualization tools for FT-MS data