#' @title Title
#'
#' @description Description
#'
#' @param x A number.
#' @param y A number.
#' @return return value here.
#' @details
#' Additional details here
#' @examples
#' example function call here
#' @export
input_parameters_agent_attributes <-function(){
#Description:
# Vector of the individual agent attributes that populate the “pop” list
list( popVariables= c(
#-- Virulence model parameters ------------------------------ #
"s", "Status",
"NumRecipients", "Treated" ,
"ViralContribToLogSP0" ,
"EnvirContribToLogSP0", "LogSetPoint",
"SetPoint", "d_acute",
"Generation", "RandomTimeToAIDS",
"Time_Inf", "V",
"vl_phase2_trans", "rate_phase2",
"PPP", "vl_peak_agent",
"vl_at_test", "cd4_at_test",
"Donors_V", "Donors_treated", "Donors_treated_2nd_line",
"Donors_ViralContribToLogSP0", "Donors_EnvirContribToLogSP0",
"Donors_Total_Time_Inf_At_Trans", "Donors_Generation",
"Donors_Index", "Donors_age",
"Donors_LogSetPoint", "Donors_SetPoint",
"Donors_d_acute", "Time_Death",
"Donors_diag_status",
"V_vec", "I_vec",
"M_vec", "L_vec",
"K",
"CD4count", "CD4tot",
"Imm_Trig",
"ChronPhase", "OnDrug",
"Adherence1","Adherence2", "Adherence3","Adherence4",
"Drug1", "Drug2", "Drug3", "Drug4",
"aim3_no_muts", "adherence_start",
"adherence_type", "CD4",
"CD4_time", "CD4_initial_value",
"CD4_treatment_delay_index", "spvl_cat",
"CD4_time_death", 'CD4_time_cat1',
"CD4_time_cat2", "CD4_time_cat3",
"CD4_time_cat4", "CD4_nadir",
"virus_sens_vacc", "virus_sens_drug",
"virus_part_res_drug", "virus_3_plus_drug_muts",
"Aim3RoundingErrors", "aim3_mutations_long",
# -- testing for and treatment of drug resistant viruses (aim 3) --- #
"eligible_2nd_line_ART",
"treated_2nd_line",
"diag_resist_status",
"diag_resist_time",
"last_neg_resist_test",
"time_init_2nd_line",
#-- Vital dynamics /social/treatment ------------------------------ #
"vaccinated", "vacc_init_time",
"age", "arrival_time",
"last_neg_test", "diag_status",
"diag_time", "disclosure_status",
"id", "eligible_care",
"att1",
"treated", "tx_init_time",
"circum", "tx_schedule",
"sti_status", "sex",
"viral_lineage", "viral_lineage_init_SPVL",
"total_acts", "role")
##############################
) #end of list
}
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