Files in FNTD/R-package-classic
Processing and analysis of fluorescent nuclear track detector images (former R-style version)

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/AN.Analyse.Hit.Records.R R/AN.Fluence.Histogram.Functions.R R/AN.Help.Functions.R R/AN.Poisson.Exact.Functions.R R/AN.Spatial.Uniformity.Functions.R R/AN.Stitch.df.tracks.R R/AN.Workflow.Uniformity.R R/AN.create.xlsx.files.R R/AN.ggplot.fits.R R/AN.ggplot2.functions.R R/FNTD.LET.from.intensity.R R/FNTD.LET.water.from.LET.Al2O3.R R/FNTD.analyze.basic.R R/FNTD.analyze.calibration.R R/FNTD.analyze.distributions.R R/FNTD.analyze.intensity.straggling.R R/FNTD.analyze.main.R R/FNTD.calibration.R R/FNTD.correct.angular.dependency.R R/FNTD.correct.field.nonuniformity.R R/FNTD.correct.sensitivity.fluctuation.R R/FNTD.correct.spherical.abberation.R R/FNTD.d.phi.deg.R R/FNTD.d.theta.deg.R R/FNTD.dose.Gy.R R/FNTD.draw.cell.hit.R R/FNTD.filter.track.length.R R/FNTD.find.cell.hits.R R/FNTD.find.depth.R R/FNTD.find.tracks.R R/FNTD.find.trackspots.R R/FNTD.fluence.L.V.cm2.R R/FNTD.get.adjusted.countrate.image.R R/FNTD.get.background.R R/FNTD.get.cell.energy.deposition.R R/FNTD.get.cell.hit.statistics.R R/FNTD.get.hyperstack.dims.R R/FNTD.get.track.fits.R R/FNTD.get.track.properties.R R/FNTD.get.tracks.R R/FNTD.get.tracks.of.length.R R/FNTD.get.trackspot.properties.R R/FNTD.normalize.stack.R R/FNTD.phi.deg.R R/FNTD.plot.image.R R/FNTD.process.compile.meta.data.R R/FNTD.process.track.and.link.R R/FNTD.process.track.results.R R/FNTD.process.tracking.results.R R/FNTD.read.image.R R/FNTD.remove.R R/FNTD.run.R R/FNTD.saturation.correction.R R/FNTD.save.as.tracks.R R/FNTD.save.image.R R/FNTD.save.tracks.R R/FNTD.show.image.R R/FNTD.theta.deg.R R/FNTD.track.and.link.R R/FNTD.workflow.analyze.R R/FNTD.workflow.process.R R/FNTD.workflow.report.R R/FNTDdistData-class.R R/FNTDjimage-class.R R/FNTDoptions-class.R R/JJ.calib.intens.strag.R R/JJ.heatmap.R R/SG.SignalBackgroundNoise.R R/SG.facet_layout.R R/SG.facet_multiple.R R/SG.null.plot.R R/SG.parallel.lapply.R R/SG.unique.factor.R R/SG.vtapply.R R/SG.xyplot.error.bars.R R/zzz.R README.md
cleanup
demo/00Index
demo/IBCT.workflow.example.R exec/AN.Spatial.Uniformity.Rmd
exec/CalibrationScripts/Calibration.Coefficients.txt
exec/CalibrationScripts/sg80000_LSM_Slices_Reduced/.gitignore
exec/CalibrationScripts/sg80000_LSM_Slices_Reduced/sg80000.R
exec/CalibrationScripts/sg80000_LSM_Slices_Reduced/sg80000.max.xml
exec/CalibrationScripts/sg80000_LSM_Slices_Reduced/sg80000.sum.xml
exec/CalibrationScripts/sg80000_LSM_Slices_Reduced/sg80000_LSM_Slices_Reduced.Rproj
exec/CalibrationScripts/sg80001_Grischa_Redo/.gitignore
exec/CalibrationScripts/sg80001_Grischa_Redo/Import.Grischa.Data.R
exec/CalibrationScripts/sg80001_Grischa_Redo/README
exec/CalibrationScripts/sg80001_Grischa_Redo/df.tracks.rdd
exec/CalibrationScripts/sg80001_Grischa_Redo/sg80001.R
exec/CalibrationScripts/sg80001_Grischa_Redo/sg80001.xml
exec/CalibrationScripts/sg80001_Grischa_Redo/sg80001_Grischa_Redo.Rproj
exec/CalibrationScripts/sg80002_FXR_Reduced/.gitignore
exec/CalibrationScripts/sg80002_FXR_Reduced/README
exec/CalibrationScripts/sg80002_FXR_Reduced/sg80002.R
exec/CalibrationScripts/sg80002_FXR_Reduced/sg80002.max.xml
exec/CalibrationScripts/sg80002_FXR_Reduced/sg80002.sum.xml
exec/CalibrationScripts/sg80002_FXR_Reduced/sg80002_FXR_Reduced.Rproj
exec/CalibrationScripts/sg80003_Alex_redo/.gitignore
exec/CalibrationScripts/sg80003_Alex_redo/sg80003.R
exec/CalibrationScripts/sg80003_Alex_redo/sg80003.xml
exec/CalibrationScripts/sg80003_Alex_redo/sg80003_Alex_redo.Rproj
exec/CalibrationScripts/sg80004_FXR_Normal/.gitignore
exec/CalibrationScripts/sg80004_FXR_Normal/sg80004.R
exec/CalibrationScripts/sg80004_FXR_Normal/sg80004.xml
exec/CalibrationScripts/sg80004_FXR_Normal/sg80004_FXR_Normal.Rproj
exec/CalibrationScripts/sg80005_LSM_Slices_Normal/.gitignore
exec/CalibrationScripts/sg80005_LSM_Slices_Normal/sg80005.R
exec/CalibrationScripts/sg80005_LSM_Slices_Normal/sg80005.xml
exec/CalibrationScripts/sg80005_LSM_Slices_Normal/sg80005_LSM_Slices_Normal.Rproj
exec/CalibrationScripts/sg80006_LSM_Stacks_Reduced/.gitignore
exec/CalibrationScripts/sg80006_LSM_Stacks_Reduced/sg80006.R
exec/CalibrationScripts/sg80006_LSM_Stacks_Reduced/sg80006.xml
exec/CreateTestImages/FNTD.create.image.R exec/CreateTestImages/FNTD.create.image.Test01.R exec/CreateTestImages/FNTD.create.image.Test02.R exec/CreateTestImages/FNTD.create.image.Test03.R exec/CreateTestImages/FNTD.create.image.Test04.R exec/CreateTestImages/FNTD.create.image.Test05.R exec/CreateTestImages/FNTD.create.image.Test06.R exec/CreateTestImages/FNTD.create.image.Test07.R exec/CreateTestImages/FNTD.create.image.Test08.R exec/CreateTestImages/FNTD.create.image.Test09.R exec/CreateTestImages/FNTD.create.image.Test10.R exec/CreateTestImages/FNTD.create.image.Test11.R exec/CreateTestImages/FNTD.create.image.Test12.R exec/CreateTestImages/FNTD.create.image.Test13.R exec/CreateTestImages/FNTD.create.image.functions.R
exec/Development/AlexN/.gitignore
exec/Development/AlexN/Der.Scale.Formula/.gitignore
exec/Development/AlexN/Der.Scale.Formula/Workflow.Data.For.Formula.R exec/Development/AlexN/Der.Scale.Formula/Workflow.Fit.Intermediate.R exec/Development/AlexN/Der.Scale.Formula/Workflow.Fit.Scale.R
exec/Development/AlexN/Der.Scale.Formula/fit.coefficients.xlsx
exec/Development/AlexN/Large.Sample/.gitignore
exec/Development/AlexN/Large.Sample/Beam Records/.gitignore
exec/Development/AlexN/Large.Sample/Beam.Records.R exec/Development/AlexN/Large.Sample/Collect.Results.R exec/Development/AlexN/Large.Sample/MaxiRun.R exec/Development/AlexN/Large.Sample/Workflow.Intensity.Histogram.R exec/Development/AlexN/Large.Sample/Workflow_Analyse_Large_Samples.R exec/Development/AlexN/Large.Sample/Workflow_Uniformity_He.R exec/Development/AlexN/Large.Sample/Workflow_Uniformity_Step.R
exec/Development/AlexN/Min.Scale/.gitignore
exec/Development/AlexN/Min.Scale/.gitignore~547ea63e94ed7547d11e3468ab1c952d88e1d871
exec/Development/AlexN/Min.Scale/Workflow.Minimal.Lateral.Scale.Particles.R exec/Development/AlexN/Min.Scale/Workflow.Scale.Grischa.Samples.R exec/Development/AlexN/Min.Scale/Workflow.Scale.Large.Samples.R exec/Development/AlexN/Min.Scale/Workflow.Scale.Nucleus.R exec/Development/AlexN/Min.Scale/Workflow.Table.Max.Fluence.R
exec/Development/AlexN/SSD.intro/.gitignore
exec/Development/AlexN/SSD.intro/AN.SSD.fluence.scale.plot.R exec/Development/AlexN/SSD.intro/Workflow.SSD.Intro.Fluctuations.R
exec/Development/AlexN/Test.Uniformity/.gitignore
exec/Development/AlexN/Test.Uniformity/SSD/BH.LET.plot.R
exec/Development/AlexN/Test.Uniformity/SSD/SSD.meta.data.xlsx
exec/Development/AlexN/Test.Uniformity/SSD/Workflow.Signif.LET.dependence.R exec/Development/AlexN/Test.Uniformity/SSD/Workflow.Uniformity.FNTDs.R
exec/Development/AlexN/Test.Uniformity/sg80002_FNTD.results_alpha=0.05.xlsx
exec/Development/AlexN/cleanup.R exec/Development/AlexN/fluence.dosimetry/fluence.dose.R exec/Development/AlexN/obsolete/LIBAMTRACK.calculations.R exec/Development/AlexN/obsolete/gk5000.density.plot.R
exec/Development/AlexN/obsolete/read.dist.data.R
exec/Development/AlexN/obsolete/read.dist.data2.R exec/Development/AlexN/obsolete/scatter.hist.R exec/Development/AlexN/read.dist.data/create.xlsx.R exec/Development/AlexN/read.dist.data/read.dist.data.R exec/Development/Jeannette/Calibration/calibration.R exec/Development/Jeannette/Heatmaps/JJ.heatmap.R exec/Development/Jeannette/Heatmaps/JJ.test.R exec/Development/Jeannette/IntensityStraggling/IntensityStraggling.R exec/Development/Jeannette/IntensityStraggling/IntensityStraggling_FXR_time.R exec/Development/Jeannette/IntensityStraggling/IntensityStraggling_Spatial.R exec/Development/Jeannette/IntensityStraggling/IntensityStraggling_myversion.R exec/Development/Jeannette/IntensityStraggling/ggmarginalLike.R exec/Development/Jeannette/IntensityStraggling/intens_stragg_width.R exec/Development/Jeannette/IntensityStraggling/mastercurve.R exec/Development/Jeannette/IntensityStraggling/pointplot.R exec/Development/Jeannette/IntensityStraggling/pointplot_Calibration.R exec/Development/Jeannette/IntensityStraggling/statplots.R exec/Development/Jeannette/IntensityStraggling/stragg_depend_tl.R exec/Development/Jeannette/IntensityStraggling/visualization_intensity.R exec/Development/Shirin/FNTDAnalysis.Gui.R exec/Development/Shirin/GetOptionsFromGui.R exec/Development/Shirin/GuiFunctions.R exec/Development/Steffen/Misc/evaluate.tracks.R exec/Development/Steffen/Misc/evaluate.weka.tracks.R exec/Development/Steffen/Misc/response.model.R exec/Development/Steffen/RobustEstimators.R exec/Development/Steffen/checkAmplitude.R exec/Development/Steffen/checkAmplitude2.R exec/Development/Steffen/dieSuche.R exec/Development/Steffen/dieSuche2.R exec/Development/Steffen/testMomenta.R exec/Development/Steffen/testo_MDACC.R exec/Development/Steffen/testo_gk5000.R exec/Development/Steffen/testo_lb1006.R exec/Development/Steffen/testo_lu30xx.R
exec/Documentation/.gitignore
exec/Documentation/FNTDPaket_Details.tex
exec/Documentation/FNTDPaket_QuickStart.tex
exec/Documentation/FNTD_R-package.tex
exec/Documentation/FNTDoptions.tex
exec/Documentation/Rd.sty
exec/Documentation/images/FNTD-RpackageStruktur1.png
exec/Documentation/images/FNTD-RpackageStruktur3.png
exec/Documentation/material/FNTD-RpackageStruktur1.pptx
exec/Documentation/material/FNTD-RpackageStruktur1b.pptx
exec/Documentation/material/FNTD-RpackageStruktur3.pptx
exec/Documentation/material/FNTD-RpackageStruktur3b.pptx
exec/Documentation/material/FNTD-RpackageStruktur4.pptx
exec/Documentation/theBib.bib
exec/FunctionPool/FNTD.apply.R
exec/FunctionPool/FNTD.apply.Rd
exec/FunctionPool/FNTD.apply.axial.correction.R
exec/FunctionPool/FNTD.apply.axial.correction.Rd
exec/FunctionPool/FNTD.apply.flatfield.R
exec/FunctionPool/FNTD.apply.flatfield.Rd
exec/FunctionPool/FNTD.apply.polar.correction.R
exec/FunctionPool/FNTD.apply.polar.correction.Rd
exec/FunctionPool/FNTD.copy.tracks.R
exec/FunctionPool/FNTD.copy.tracks.Rd
exec/FunctionPool/FNTD.expand.track.length.R
exec/FunctionPool/FNTD.expand.track.length.Rd
exec/FunctionPool/FNTD.filter.borders.R
exec/FunctionPool/FNTD.filter.borders.Rd
exec/FunctionPool/FNTD.find.weka.trackspots.R
exec/FunctionPool/FNTD.find.weka.trackspots.Rd
exec/FunctionPool/FNTD.get.mask.R
exec/FunctionPool/FNTD.get.mask.Rd
exec/FunctionPool/FNTD.get.track.angles.R exec/FunctionPool/FNTD.get.tracks.from.ID.R exec/FunctionPool/FNTD.import.tracks.R
exec/FunctionPool/FNTD.import.tracks.Rd
exec/FunctionPool/FNTD.tilt.tracks.R
exec/FunctionPool/FNTD.tilt.tracks.Rd
exec/Get.Tracking.Images.R exec/Report.Analysis.Basic.Rmd exec/Report.Analysis.Main.Rmd exec/Report.Calibration.Rmd exec/Report.Corrections.Rmd exec/Report.Distributions.Interactive.Rmd exec/Report.Distributions.Rmd
inst/doc/.gitignore
inst/doc/FNTD_R-package.pdf
inst/extdata/FNTD.option.file.xsd
inst/extdata/IBCT_example.zip
inst/extdata/TestImages/IBCT.Options.TestImages.xml
inst/extdata/TestImages/Test01.zip
inst/extdata/TestImages/Test02.zip
inst/extdata/TestImages/Test03.zip
inst/extdata/TestImages/Test04.zip
inst/extdata/TestImages/Test05.zip
inst/extdata/TestImages/Test06.zip
inst/extdata/TestImages/Test07.zip
inst/extdata/TestImages/Test08.zip
inst/extdata/TestImages/Test09.zip
inst/extdata/TestImages/Test10.zip
inst/extdata/TestImages/Test11.zip
inst/extdata/TestImages/Test12.zip
inst/extdata/TestImages/Test13.zip
inst/extdata/TestImages/TestImage_Description.txt
inst/extdata/TestImages/distribution.parameters.xlsx
inst/extdata/TestImages/meta.data.xlsx
inst/extdata/TestImages/tracking.parameters.xlsx
inst/extdata/alpha_example.zip
inst/extdata/sg35041_s03.lsm
inst/java/FNTDclassic.jar
man/FNTD-package.Rd man/FNTD.LET.from.intensity.Rd man/FNTD.analyze.basic.Rd man/FNTD.analyze.calibration.Rd man/FNTD.analyze.distributions.Rd man/FNTD.analyze.intensity.straggling.Rd man/FNTD.analyze.main.Rd man/FNTD.analyze.spatial.fluence.Rd man/FNTD.calibration.Rd man/FNTD.correct.angular.dependency.Rd man/FNTD.correct.field.nonuniformity.Rd man/FNTD.correct.sensitivity.fluctuation.Rd man/FNTD.correct.spherical.abberation.Rd man/FNTD.d.phi.deg.Rd man/FNTD.d.theta.deg.Rd man/FNTD.dose.Gy.Rd man/FNTD.find.tracks.Rd man/FNTD.find.trackspots.Rd man/FNTD.get.background.Rd man/FNTD.get.track.fits.Rd man/FNTD.get.track.properties.Rd man/FNTD.get.tracks.Rd man/FNTD.get.tracks.of.length.Rd man/FNTD.get.trackspot.properties.Rd man/FNTD.normalize.stack.Rd man/FNTD.plot.image.Rd man/FNTD.read.image.Rd man/FNTD.remove.Rd man/FNTD.saturation.correction.Rd man/FNTD.save.image.Rd man/FNTD.show.image.Rd man/FNTDdistData-class.Rd man/FNTDdistData.analyze.distribution.Rd man/FNTDdistData.get.components.Rd man/FNTDdistDataElement-class.Rd man/FNTDjImage-class.Rd man/FNTDoptions-class.Rd man/SG.facet_layout.Rd man/SG.facet_multiple.Rd man/dim-FNTDjImage-method.Rd tests/01-Demo.R
FNTD/R-package-classic documentation built on Oct. 18, 2017, 12:59 p.m.