Man pages for GRealesM/RapidoPGS
A Fast and Light Package to Compute Polygenic Risk Scores
| create_1000G | Download 1000 Genomes Phase III panel |
| EUR_ld.blocks19 | LD block architecture for European populations (hg19). |
| EUR_ld.blocks38 | LD block architecture for European populations (hg38). |
| find_file_in_ftp | Finding a file in an FTP directory This is an internal... |
| gwascat.download | Retrieve GWAS summary datasets from GWAS catalog... |
| logsum | Helper function to sum logs without loss of precision |
| michailidou19 | Subset of Michailidou BRCA GWAS sumstat dataset. |
| michailidou38 | Subset of Michailidou BRCA GWAS sumstat dataset. |
| rapidopgs_multi | Compute PGS from GWAS summary statistics using Bayesian sum... |
| rapidopgs_single | Compute PGS from GWAS summary statistics using posteriors... |
| sd.prior.est | Compute Standard deviation prior (SD prior) for quantitative... |
| sdY.est | Estimate trait variance, internal function |
| wakefield_pp | compute posterior probabilities using Wakefield's approximate... |
| wakefield_pp_quant | Compute posterior probabilities using Wakefield's approximate... |
