evalCorrelationDecomp: Evaluate SVD of correlation structure

Description Usage Arguments

Description

Evaluate SVD of correlation structure for test statistics

Usage

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evalCorrelationDecomp(vobj, fit, L, computeCorr = FALSE,
  varianceFraction = 0.99, rank = ncol(vobj), squaredCorr = TRUE,
  maxRankCarryOver = 50)

Arguments

vobj

voom result

fit

model fit from lmFit

L

contrast matrix

computeCorr

compute correlation matrix

varianceFraction

fraction of variance to retain after truncating trailing eigen values

rank

maximum number of principal components

squaredCorr

boolean. Evaluate the spectral decomposition of the squared correlation matrix

maxRankCarryOver

maximum rank to carry over to compute squared correlation decomposition, since this operation is O(maxRankCarryOver^4)


GabrielHoffman/pinnacle documentation built on May 3, 2019, 3:02 p.m.