Description Usage Arguments Value

Contruct correlation matrix C, and return mu_cor = mean(C) and mu_abs_cor = mean(abs(C)), using only the off-diagonal values in C

1 | ```
getCorrInGeneSet(vobj, geneSets, df_peakGeneMap, r.squared = TRUE)
``` |

`vobj` |
normalized expression produced by voom() |

`geneSets` |
list of genesets |

`df_peakGeneMap` |
distances from each peak to genes from getPeakGeneDistances() |

`r.squared` |
use r^2, default is FALSE |

data.frame of mu_cor and mu_abs_cor for each geneset

GabrielHoffman/pinnacle documentation built on May 3, 2019, 3:02 p.m.

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