getGeneMapping: Get mapping from differential analysis to genomic annotations

Description Usage Arguments Value

Description

Get mapping from differential analysis to genomic annotations

Usage

1
getGeneMapping(fit, L, target, peakLocation)

Arguments

fit

model fit from lmFit() in limma or dream() in variancePartition

L

contrast matrix

target

GRanges object of locations of genes

peakLocation

GRanges object of intervals measured in fit

Value

data.table of test statistics and annotations for each feature


GabrielHoffman/pinnacle documentation built on May 3, 2019, 3:02 p.m.