plotEnrichment: Plot enrichment results

Description Usage Arguments Value

Description

Plot results of gene set enrichment analysis

Usage

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plotEnrichment(res, statistic = "-log10(FDR)", nsets = 20,
  direction = "both", maxChar = 50, fill = c(both = "black", up =
  "darkred", down = "darkblue"))

Arguments

res

data.frame of results from evaluateEnrichment

statistic

value to plot for each gene set

nsets

number of genesets to plot

direction

plot genesets in direction 'both', 'up', or 'down'

maxChar

max characters to show for each gene set name

fill

color of bars corresponding to direction

Value

ggplot2


GabrielHoffman/pinnacle documentation built on May 3, 2019, 3:02 p.m.