Man pages for GabrielHoffman/variancePartition
Quantify and interpret divers of variation in multilevel gene expression experiments

as.data.frame-varPartResults-methodConvert to data.frame
as.matrix-varPartResults-methodConvert to matrix
calcVarPart-methodCompute variance statistics
canCorPairscanCorPairs
colinearityScoreCollinearity score
dream-methodDifferential expression with linear mixed model
eBayes-methodeBayes for MArrayLM2
ESS-methodEffective sample size
extractVarPartExtract variance statistics
fitExtractVarPartModel-methodFit linear (mixed) model, report variance fractions
fitVarPartModel-methodFit linear (mixed) model
getContrast-methodExtract contrast matrix for linear mixed model
getVarianceComponentsExtract variance terms
ggColorHueDefault colors for ggplot
MArrayLM2-classClass MArrayLM2.
plotCompareP-methodCompare p-values from two analyses
plotCorrMatrixplotCorrMatrix
plotCorrStructureplotCorrStructure
plotPercentBarsBar plot of variance fractions
plotStratifyplotStratify
plotStratifyByplotStratifyBy
plotVarPart-methodViolin plot of variance fractions
residuals-VarParFitList-methodResiduals from model fit
sortCols-methodSort variance partition statistics
sub-.MArrayLM2Subseting for MArrayLM2
varPartConfInfLinear mixed model confidence intervals
varPartDataSimulation dataset for examples
varPartDEdataSimulation dataset for dream example
GabrielHoffman/variancePartition documentation built on Oct. 23, 2018, 12:12 p.m.