Files in GuangchuangYu/clusterProfiler
statistical analysis and visualization of functional profiles for genes and gene clusters

.Rbuildignore
.github/issue_template.md
.gitignore
.svnignore
.travis.yml
CONTRIBUTING.md
DESCRIPTION
Makefile
NAMESPACE
NEWS
R/00-AllClasses.R R/AllGenerics.R R/DOSE.R R/GFFparser.R R/GMT.R R/accessor.R R/bitr.R R/buildGOmap.R R/clusterProfiler-package.R R/compareCluster.R R/dotplot.R R/enrichDAVID.R R/enrichGO.R R/enrichKEGG.R R/enrichMKEGG.R R/enricher.R R/go-utilities.R R/gofilter.R R/groupGO.R R/gseAnalyzer.R R/kegg-utilities.R R/plotGOgraph.R R/simplify.R R/utilities.R R/zzz.R README.Rmd README.md
appveyor.yml
data/gcSample.rda
data/kegg_species.rda
docs/categories/index.xml
docs/documentation/index.html
docs/documentation/index.rmd
docs/documentation/index.xml
docs/featured-articles/index.html
docs/featured-articles/index.rmd
docs/featured-articles/index.xml
docs/fonts/icon.eot
docs/fonts/icon.svg
docs/fonts/icon.ttf
docs/fonts/icon.woff
docs/images/citation.png
docs/images/colors.png
docs/images/dlstats.png
docs/images/favicon.ico
docs/images/hsa04110_pathview.png
docs/images/logo.png
docs/images/screen.png
docs/index.html
docs/index.rmd
docs/index.xml
docs/javascripts/application.js
docs/javascripts/modernizr.js
docs/sitemap.xml
docs/stylesheets/application.css
docs/stylesheets/highlight/highlight.css
docs/stylesheets/palettes.css
docs/stylesheets/temporary.css
docs/tags/index.xml
inst/CITATION
inst/extdata/c5.cc.v5.0.entrez.gmt
man/DataSet.Rd man/GSEA.Rd man/Gff2GeneTable.Rd man/KEGG_path2extid.Rd man/bitr.Rd man/bitr_kegg.Rd man/browseKEGG.Rd man/buildGOmap.Rd man/clusterProfiler-package.Rd man/compareCluster.Rd man/compareClusterResult-class.Rd man/dotplot-methods.Rd man/download_KEGG.Rd man/dropGO.Rd man/enrichDAVID.Rd man/enrichGO.Rd man/enrichKEGG.Rd man/enrichMKEGG.Rd man/enricher.Rd man/fortify.Rd man/getGOLevel.Rd man/go2ont.Rd man/go2term.Rd man/gofilter.Rd man/groupGO.Rd man/groupGOResult-class.Rd man/gseGO.Rd man/gseKEGG.Rd man/gseMKEGG.Rd man/idType.Rd man/ko2name.Rd man/merge_result.Rd man/plot-methods.Rd man/plotGOgraph.Rd man/plotting.clusterProfile.Rd man/read.gmt.Rd man/search_kegg_organism.Rd man/simplify-methods.Rd man/viewKEGG.Rd
outdated/D39/EG2ALLGO.rda
outdated/D39/EG2GO.rda
outdated/D39/GO2ALLEG.rda
outdated/D39/GO2EG.rda
outdated/D39/geneTable.rda
outdated/D39/proteinTable.rda
outdated/M5005/EG2ALLGO.rda
outdated/M5005/EG2GO.rda
outdated/M5005/GO2ALLEG.rda
outdated/M5005/GO2EG.rda
outdated/M5005/geneTable.rda
outdated/NC_007297.gff
outdated/clusterProfiler.Rnw
outdated/clusterProfiler_for_unsupported_organisms.pdf
outdated/for_unsupported.html
outdated/for_unsupported.md outdated/for_unsupported.rmd outdated/rmd2pdf.R
site_src/config.toml
site_src/content/documentation/index.html
site_src/content/documentation/index.rmd
site_src/content/featured-articles/index.html
site_src/content/featured-articles/index.rmd
site_src/content/index.html
site_src/content/index.rmd site_src/index.Rmd tests/testthat.R tests/testthat/test-bitr.R vignettes/clusterProfiler.Rmd
vignettes/clusterProfiler.bib
vignettes/figures/browseKEGG.png
vignettes/figures/cnetplot.png
vignettes/figures/enrichMap.png
vignettes/figures/hsa04110_pathview.png
vignettes/nature.csl
GuangchuangYu/clusterProfiler documentation built on Dec. 27, 2017, 5:24 p.m.