API for GuangchuangYu/ggtree
an R package for visualization of tree and annotation data

Global functions
%+>% Man page
%<% Man page
%<+% Man page
%>% Man page
.onAttach Source code
Date2decimal Man page Source code
GeomHilight Man page
MRCA Man page
MRCA.ggtree Source code
StatBalance Man page
StatHilight Man page
`%+>%` Source code
`%<%` Source code
`%<+%` Source code
`%add%` Source code
`%add2%` Source code
`%place%` Source code
add_colorbar Man page Source code
add_panel Source code
aes Man page
annotation_image Man page Source code
applyLayoutDaylight Man page Source code
arrow Man page
as.polytomy Man page Source code
axis_align Source code
calculate_angle Source code
collapse Man page
collapse.ggtree Man page Source code
color_scale Source code
cophenetic.phylo.check.length Source code
coplot Source code
decimal2Date Man page Source code
draw_key_hack Source code
expand Man page Source code
facet_data Man page Source code
facet_labeller Man page Source code
facet_plot Man page Source code
facet_widths Man page Source code
flip Man page Source code
fortify Man page
fortify.multiPhylo Source code
fortify.obkData Source code
fortify.phylo Source code
fortify.phylo4 Source code
fortify.phylo4d Source code
fortify.phyloseq Source code
fortify.treedata Source code
geom_aline Man page Source code
geom_balance Man page Source code
geom_cladelabel Man page Source code
geom_cladelabel2 Man page Source code
geom_cladelabel_rectangular Source code
geom_facet Man page Source code
geom_hilight Man page Source code
geom_hilight_encircle Man page Source code
geom_hilight_rectangular Source code
geom_inset Man page Source code
geom_label Man page
geom_label2 Man page Source code
geom_motif Man page Source code
geom_nodelab Man page Source code
geom_nodelab2 Man page Source code
geom_nodepoint Man page Source code
geom_point Man page
geom_point2 Man page Source code
geom_range Man page Source code
geom_range_internal Source code
geom_rootedge Man page Source code
geom_rootpoint Man page Source code
geom_segment2 Man page Source code
geom_strip Man page Source code
geom_taxalink Man page Source code
geom_text Man page
geom_text2 Man page Source code
geom_tiplab Man page Source code
geom_tiplab2 Man page Source code
geom_tiplab_rectangular Source code
geom_tippoint Man page Source code
geom_tree Man page Source code
geom_tree2 Man page Source code
geom_treescale Man page Source code
get.path Man page
getIdx Source code
getIdx_internal Source code
getNodeAngle.df Man page
getNodesBreadthFirst.df Man page
getSubtree Man page
getSubtree.df Man page
getSubtreeUnrooted Man page
getSubtreeUnrooted.df Man page
getTreeArcAngles Man page
get_balance_position Source code
get_balance_position_ Source code
get_clade_position Man page Source code
get_clade_position_ Source code
get_cladelabel2_position_ Source code
get_cladelabel2_position_bar Source code
get_cladelabel2_position_label Source code
get_cladelabel_position Source code
get_cladelabel_position_ Source code
get_color_attribute Source code
get_glob_encircle Source code
get_heatmap_column_position Man page Source code
get_striplabel_position Source code
get_striplabel_position_ Source code
get_taxa_name Man page Source code
get_tree_view Source code
get_treescale_position Source code
ggdensitree Man page Source code
ggpie Source code
ggplot Man page
ggplot_add.axisAlign Source code
ggplot_add.cladelabel Source code
ggplot_add.facet_plot Source code
ggplot_add.facet_xlim Source code
ggplot_add.geom_range Source code
ggplot_add.hilight Source code
ggplot_add.layout_ggtree Source code
ggplot_add.range_xaxis Source code
ggplot_add.scale_ggtree Source code
ggplot_add.striplabel Source code
ggplot_add.tiplab Source code
ggplot_add.tree_inset Source code
ggrange Source code
ggsave Man page
ggtree Man page Source code
ggtree-package Man page
gheatmap Man page Source code
groupClade Man page
groupClade.ggtree Source code
groupOTU Man page
groupOTU.ggtree Source code
gzoom Man page
gzoom,ggtree-method Man page
gzoom,phylo-method Man page
gzoom,treedata-method Man page
gzoom.ggtree Source code
gzoom.phylo Man page Source code
identify.gg Man page Source code
inset Man page Source code
is.tree_attribute Source code
is.tree_attribute_ Source code
is.viewClade Source code
layout.unrooted Source code
layoutDaylight Man page Source code
layoutEqualAngle Man page Source code
layout_circular Man page Source code
layout_dendrogram Man page Source code
layout_fan Man page Source code
layout_ggtree Source code
layout_rectangular Man page Source code
msaplot Man page Source code
multiplot Man page Source code
nodebar Man page Source code
nodeid Man page
nodeid.ggtree Source code
nodelab Man page
nodelab.ggtree Source code
nodepie Man page Source code
open_tree Man page Source code
package-ggtree Man page
panel_col_levels Source code
panel_col_var Source code
phylopic Man page Source code
plot_fantree Source code
plot_fantrees Source code
range_center Source code
range_format Man page Source code
range_lower Source code
range_upper Source code
read.tree Man page
reassign_y_from_node_to_root Source code
reexports Man page
reverse.treeview Source code
reverse.treeview.data Source code
revts Man page Source code
rotate Man page Source code
rotateTreePoints.df Man page
rotate_tree Man page Source code
roundDigit Source code
rtree Man page
scaleClade Man page Source code
scaleX_by_time Source code
scaleX_by_time_from_mrsd Source code
scaleY Source code
scale_color Man page
scale_color,phylo-method Man page
scale_color,treedata-method Man page
scale_color_ Source code
scale_x_ggtree Man page Source code
scale_x_range Man page Source code
set_branch_length_cladogram Source code
set_hilight_legend Man page
setup_data_continuous_color Source code
setup_data_continuous_color_tree Source code
setup_tree_data Source code
stat_cladeBar Source code
stat_cladeBar2 Source code
stat_cladeText Source code
stat_cladeText2 Source code
stat_hilight Man page Source code
stat_tree Source code
stat_treeScaleLine Source code
stat_treeScaleText Source code
subview Man page Source code
taxa2node Source code
theme Man page
theme_dendrogram Man page Source code
theme_inset Man page Source code
theme_tree Man page Source code
theme_tree2 Man page Source code
theme_tree2_internal Source code
unit Man page
viewClade Man page Source code
xlim Man page
xlim2 Man page Source code
xlim_expand Man page Source code
xlim_tree Man page Source code
xrange Source code
ylim2 Man page Source code
yrange Source code
GuangchuangYu/ggtree documentation built on Nov. 6, 2019, 10:46 a.m.