Man pages for GuangchuangYu/treeio
Base Classes and Functions for Phylogenetic Tree Input and Output

as.treedataas.treedata
beast-parserread.beast
drop.tip-methodsdrop.tip method
getNodeNumgetNodeNum
get-placementsget.placements
get.treeget.tree
get.treetext-methodsget.treetext method
is.ggtreeis.ggtree
isTipisTip
jplace-classClass "jplace" This class stores phylogenetic placements
label_branch_pamllabel_branch_paml
maskmask
merge_treemerge_tree
Nnode.treedataNnode
print.beastListprint
raxml2nwkraxml2nwk
read.astralread.astral
read.codemlread.codeml
read.codeml_mlcread.codeml_mlc
read.fastaread.fasta
read.hyphyread.hyphy
read.hyphy.seqread.hyphy.seq
read.iqtreeread.iqtree
read.jplaceread.jplace
read-jtreeread.jtree
read.mega_tabularread.mega_tabular
read.newickread.newick
read.nhxread.nhx
read.paml_rstread.paml_rst
read.phylipread.phylip
read.phylip.seqread.phylip.seq
read.phylip.treeread.phylip.tree
read.phyloTread.phyloT
read.r8sread.r8s
read.raxmlread.raxml
reexportsObjects exported from other packages
rename_taxarename_taxa
rescale_treerescale_tree
root-methodroot
tree_subsetSubset tree objects by related nodes
write.beastwrite.beast
write.jplacewrite.jplace
write-jtreewrite.jtree
GuangchuangYu/treeio documentation built on Nov. 18, 2019, 7:24 p.m.