View source: R/plot_diverse_homology_thresholds_core_orthologs.R
plot_diverse_homology_thresholds_core_orthologs | R Documentation |
generate_ortholog_tables_all
based on different sets of homology thresholds.Given a ortho table generated with generate_ortholog_tables_all
,
this function will visualize the number of core orthologs
using a diverse range of homology thresholds to enable an analytical decision for chosing homology thresholds to define orthologous genes.
plot_diverse_homology_thresholds_core_orthologs(
ortho_tables,
species_order,
type = "both",
xlab = "Parameter set for selecting core orthologs",
ylab = "Number of corresponding core orthologs",
title = ""
)
ortho_tables |
a |
species_order |
a character string specifying species names listed in the order of phylogenetic/taxonomic distance from the query species.
The species names must match with the species names present in the |
type |
type of core orthologs that shall be visualized:
|
xlab |
x-axis label. |
ylab |
y-axis label. |
title |
plot title. |
Hajk-Georg Drost
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