Files in HelenaLC/CATALYST

Cytometry dATa anALYSis Tools

.Rbuildignore

.github/workflows/check-bioc.yml

.gitignore

DESCRIPTION

NAMESPACE

NEWS

R/.Rapp.history

R/AllGenerics.R R/AllMethods.R R/adaptSpillmat.R R/applyCutoffs.R R/assignPrelim.R R/clrDR.R R/cluster.R R/compCytof.R R/computeSpillmat.R R/data.R R/estCutoffs.R R/extractClusters.R R/filterSCE.R R/guessPanel.R R/mergeClusters.R R/normCytof.R R/pbMDS.R R/plotAbundances.R R/plotClusterExprs.R R/plotClusterHeatmap.R R/plotCodes.R R/plotCounts.R R/plotDR.R R/plotDiffHeatmap.R R/plotEvents.R R/plotExprHeatmap.R R/plotExprs.R R/plotFreqHeatmap.R R/plotMahal.R R/plotMultiHeatmap.R R/plotNRS.R R/plotPbExprs.R R/plotScatter.R R/plotSpillmat.R R/plotYields.R R/prepData.R R/runDR.R R/sce2fcs.R R/utils-compensation.R R/utils-debarcoding.R R/utils-differential.R R/utils-normalization.R R/utils-preprocessing.R R/validityChecks.R README.md

data/PBMC_fs.rda

data/PBMC_md.rda

data/PBMC_panel.rda

data/isotope_list.rda

data/merging_table.rda

data/mp_cells.rda

data/raw_data.rda

data/sample_ff.rda

data/sample_key.rda

data/ss_exp.rda

inst/extdata/estCutoffs.png

inst/extdata/interactions.png

inst/extdata/methods.png

inst/extdata/refs.bib

inst/extdata/sticker.png

man/SCE-accessors.Rd man/adaptSpillmat.Rd man/applyCutoffs.Rd man/assignPrelim.Rd man/clrDR.Rd man/cluster.Rd man/compCytof.Rd man/computeSpillmat.Rd man/data.Rd man/estCutoffs.Rd man/extractClusters.Rd man/filterSCE.Rd man/guessPanel.Rd man/mergeClusters.Rd man/normCytof.Rd man/pbMDS.Rd man/plotAbundances.Rd man/plotClusterExprs.Rd man/plotClusterHeatmap.Rd man/plotCodes.Rd man/plotCounts.Rd man/plotDR.Rd man/plotDiffHeatmap.Rd man/plotEvents.Rd man/plotExprHeatmap.Rd man/plotExprs.Rd man/plotFreqHeatmap.Rd man/plotMahal.Rd man/plotMultiHeatmap.Rd man/plotNRS.Rd man/plotPbExprs.Rd man/plotScatter.Rd man/plotSpillmat.Rd man/plotYields.Rd man/prepData.Rd man/runDR.Rd man/sce2fcs.Rd tests/testthat.R tests/testthat/test_accessors.R tests/testthat/test_clustering.R tests/testthat/test_compCytof.R tests/testthat/test_computeSpillmat.R tests/testthat/test_debarcoding.R tests/testthat/test_extractClusters.R tests/testthat/test_filterSCE.R tests/testthat/test_normCytof.R tests/testthat/test_plotDiffHeatmap.R tests/testthat/test_plotExprHeatmap.R tests/testthat/test_plotMultiHeatmap.R tests/testthat/test_plotScatter.R tests/testthat/test_plotting-differential.R tests/testthat/test_plotting-preprocessing.R tests/testthat/test_prepData.R tests/testthat/test_runDR.R tests/testthat/test_sce2fcs.R tests/testthat/test_utils-compensation.R tests/testthat/test_utils-differential.R tests/testthat/test_utils-preprocessing.R vignettes/differential.Rmd vignettes/preprocessing.Rmd

HelenaLC/CATALYST documentation built on April 1, 2024, 3:16 a.m.