revdep/problems.md

In HenrikBengtsson/R.cache: Fast and Light-Weight Caching (Memoization) of Objects and Results to Speed Up Computations

aroma.core

• Version: 3.2.2
• GitHub: https://github.com/HenrikBengtsson/aroma.core
• Source code: https://github.com/cran/aroma.core
• Date/Publication: 2021-01-05 05:10:12 UTC
• Number of recursive dependencies: 48

Run revdep_details(, "aroma.core") for more info

In both

• checking package dependencies ... NOTE Packages suggested but not available for checking: 'sfit', 'expectile', 'HaarSeg', 'mpcbs'

clampSeg

• Version: 1.1-1
• GitHub: NA
• Source code: https://github.com/cran/clampSeg
• Date/Publication: 2022-01-27 23:10:06 UTC
• Number of recursive dependencies: 39

Run revdep_details(, "clampSeg") for more info

In both

• checking re-building of vignette outputs ... WARNING `` Error(s) in re-building vignettes: ... --- re-building ‘Vignette.ltx’ using tex Error: processing vignette 'Vignette.ltx' failed with diagnostics: Running 'texi2dvi' on 'Vignette.ltx' failed. LaTeX errors: ! LaTeX Error: FileIEEEtran.cls' not found.

  Type X to quit or to proceed, or enter new name. (Default extension: cls) ... l.5 ^^M

  ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘Vignette.ltx’

  SUMMARY: processing the following file failed: ‘Vignette.ltx’

  Error: Vignette re-building failed. Execution halted ```

csodata

• Version: 1.2.3
• GitHub: NA
• Source code: https://github.com/cran/csodata
• Date/Publication: 2022-06-10 15:40:02 UTC
• Number of recursive dependencies: 109

Run revdep_details(, "csodata") for more info

In both

• checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: ... --- re-building ‘quick_start_guide.Rmd’ using rmarkdown trying URL 'https://opendata.arcgis.com/datasets/62e0cf326bab442897944e4dc4999c16_2.zip' Quitting from lines 64-74 (quick_start_guide.Rmd) Error: processing vignette 'quick_start_guide.Rmd' failed with diagnostics: Object shp is neither from class sf, stars, Spatial, Raster, nor SpatRaster. --- failed re-building ‘quick_start_guide.Rmd’

  SUMMARY: processing the following file failed: ‘quick_start_guide.Rmd’

  Error: Vignette re-building failed. Execution halted ```

DiceView

• Version: 2.0-1
• GitHub: https://github.com/IRSN/DiceView
• Source code: https://github.com/cran/DiceView
• Date/Publication: 2020-11-27 16:30:02 UTC
• Number of recursive dependencies: 16

Run revdep_details(, "DiceView") for more info

In both

• checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘rgl’

mirTarRnaSeq

• Version: 1.4.0
• GitHub: NA
• Source code: https://github.com/cran/mirTarRnaSeq
• Date/Publication: 2022-04-26
• Number of recursive dependencies: 232

Run revdep_details(, "mirTarRnaSeq") for more info

In both

• checking examples ... ERROR ``` Running examples in ‘mirTarRnaSeq-Ex.R’ failed The error most likely occurred in:

  Name: mirRnaHeatmap

  Title: mirRnaHeatmap pheatmap for miRTarRNASeq miRNA and mRNA

  correlation

  Aliases: mirRnaHeatmap

  Keywords: color, correlation heatmap, pheatmap, plot,correlation_plot

  ** Examples

  x <- mirRnaHeatmap(corr_0) Error in loadNamespace(x) : there is no package called ‘viridis’ Calls: mirRnaHeatmap ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted ```

• checking re-building of vignette outputs ... ERROR ``` Error(s) in re-building vignettes: ... --- re-building ‘mirTarRnaSeq.Rmd’ using rmarkdown Quitting from lines 17-36 (mirTarRnaSeq.Rmd) Error: processing vignette 'mirTarRnaSeq.Rmd' failed with diagnostics: there is no package called 'viridis' --- failed re-building ‘mirTarRnaSeq.Rmd’

  SUMMARY: processing the following file failed: ‘mirTarRnaSeq.Rmd’

  Error: Vignette re-building failed. Execution halted ```

• checking installed package size ... NOTE installed size is 5.0Mb sub-directories of 1Mb or more: data 3.6Mb

• checking dependencies in R code ... NOTE Package in Depends field not imported from: ‘ggplot2’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached.

• checking for unstated dependencies in vignettes ... NOTE 'library' or 'require' calls not declared from: ‘tidyr’ ‘viridis’

MSnID

• Version: 1.30.0
• GitHub: NA
• Source code: https://github.com/cran/MSnID
• Date/Publication: 2022-04-26
• Number of recursive dependencies: 150

Run revdep_details(, "MSnID") for more info

In both

• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘BiocGenerics’ ‘BiocStyle’ ‘RUnit’ ‘ggplot2’ ‘msmsTests’ ‘xtable’ All declared Imports should be used.

• checking R code for possible problems ... NOTE .read_mzIDs.mzR.engine.single.file: no visible binding for global variable ‘peptideRef’ Undefined global functions or variables: peptideRef

• checking re-building of vignette outputs ... NOTE ``` Error(s) in re-building vignettes: --- re-building ‘handling_mods.Rnw’ using Sweave Loading required package: Rcpp

  Attaching package: ‘dplyr’

  The following objects are masked from ‘package:stats’:

  filter, lag
  

  ... l.189 \RequirePackage {parnotes}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘msnid_vignette.Rnw’

  SUMMARY: processing the following files failed: ‘handling_mods.Rnw’ ‘msnid_vignette.Rnw’

  Error: Vignette re-building failed. Execution halted ```

precommit

• Version: 0.3.2
• GitHub: https://github.com/lorenzwalthert/precommit
• Source code: https://github.com/cran/precommit
• Date/Publication: 2022-07-01 21:30:06 UTC
• Number of recursive dependencies: 95

Run revdep_details(, "precommit") for more info

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘here’ All declared Imports should be used.

QDNAseq

• Version: 1.32.0
• GitHub: https://github.com/ccagc/QDNAseq
• Source code: https://github.com/cran/QDNAseq
• Date/Publication: 2022-04-26
• Number of recursive dependencies: 82

Run revdep_details(, "QDNAseq") for more info

In both

• checking package dependencies ... NOTE Packages suggested but not available for checking: 'QDNAseq.hg19', 'QDNAseq.mm10'

• checking re-building of vignette outputs ... NOTE ``` Error(s) in re-building vignettes: --- re-building ‘QDNAseq.Rnw’ using Sweave EM algorithm started ...

  Warning in allprior/tot : Recycling array of length 1 in vector-array arithmetic is deprecated. Use c() or as.vector() instead.

  Warning in allprior/tot : Recycling array of length 1 in vector-array arithmetic is deprecated. ... l.189 \RequirePackage {parnotes}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘QDNAseq.Rnw’

  SUMMARY: processing the following file failed: ‘QDNAseq.Rnw’

  Error: Vignette re-building failed. Execution halted ```

R.rsp

• Version: 0.45.0
• GitHub: https://github.com/HenrikBengtsson/R.rsp
• Source code: https://github.com/cran/R.rsp
• Date/Publication: 2022-06-27 18:30:09 UTC
• Number of recursive dependencies: 23

Run revdep_details(, "R.rsp") for more info

In both

• checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: --- re-building ‘R_packages-Static_PDF_and_HTML_vignettes.pdf.asis’ using asis --- finished re-building ‘R_packages-Static_PDF_and_HTML_vignettes.pdf.asis’

  --- re-building ‘R_packages-LaTeX_vignettes.ltx’ using tex Error: processing vignette 'R_packages-LaTeX_vignettes.ltx' failed with diagnostics: Running 'texi2dvi' on 'R_packages-LaTeX_vignettes.ltx' failed. LaTeX errors: ! Undefined control sequence. l.21 \pdfsuppressptexinfo ... ... --- failed re-building ‘R_packages-Vignettes_prior_to_R300.tex.rsp’

  SUMMARY: processing the following files failed: ‘R_packages-LaTeX_vignettes.ltx’ ‘Dynamic_document_creation_using_RSP.tex.rsp’ ‘RSP_refcard.tex.rsp’ ‘R_packages-Vignettes_prior_to_R300.tex.rsp’

  Error: Vignette re-building failed. Execution halted ```

RKorAPClient

• Version: 0.7.2
• GitHub: https://github.com/KorAP/RKorAPClient
• Source code: https://github.com/cran/RKorAPClient
• Date/Publication: 2022-03-01 18:30:08 UTC
• Number of recursive dependencies: 118

Run revdep_details(, "RKorAPClient") for more info

In both

• checking tests ... ``` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > library("testthat") > library("RKorAPClient") > > test_check("RKorAPClient") apiUrl: https://korap.ids-mannheim.de/api/v1.0/ ...

  1. └─RKorAPClient::apiCall(...)
  2. └─RKorAPClient (local) .local(kco, ...)
  3. └─jsonlite::fromJSON(content(resp, "text", encoding = "UTF-8"))
  4. └─jsonlite:::parse_and_simplify(...)
  5. └─jsonlite:::parseJSON(txt, bigint_as_char)
  6. └─jsonlite:::parse_string(txt, bigint_as_char)

  [ FAIL 1 | WARN 0 | SKIP 27 | PASS 24 ] Error: Test failures Execution halted ```

stepR

• Version: 2.1-3
• GitHub: NA
• Source code: https://github.com/cran/stepR
• Date/Publication: 2022-05-05 23:50:02 UTC
• Number of recursive dependencies: 43

Run revdep_details(, "stepR") for more info

In both

• checking re-building of vignette outputs ... WARNING `` Error(s) in re-building vignettes: ... --- re-building ‘StepR.Rnw’ using knitr Successfully loaded stepR package version 2.1-3. Several new functions are added in version 2.0-0. Some older functions are deprecated (still working) and may be defunct in a later version. Please read the documentation for more details. Error: processing vignette 'StepR.Rnw' failed with diagnostics: Running 'texi2dvi' on 'StepR.tex' failed. LaTeX errors: ! LaTeX Error: Filebbold.sty' not found.

  ... l.72 ^^M

  ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘StepR.Rnw’

  SUMMARY: processing the following file failed: ‘StepR.Rnw’

  Error: Vignette re-building failed. Execution halted ```

• checking installed package size ... NOTE installed size is 14.2Mb sub-directories of 1Mb or more: libs 13.2Mb

TreeTools

• Version: 1.7.3
• GitHub: https://github.com/ms609/TreeTools
• Source code: https://github.com/cran/TreeTools
• Date/Publication: 2022-07-20 14:30:15 UTC
• Number of recursive dependencies: 73

Run revdep_details(, "TreeTools") for more info

In both

• checking installed package size ... NOTE installed size is 10.1Mb sub-directories of 1Mb or more: R 1.0Mb libs 8.3Mb

HenrikBengtsson/R.cache documentation built on Sept. 30, 2023, 5:01 a.m.