revdep/README.md

Platform

|field |value | |:--------|:-----------------------------------------------------------| |version |R version 4.2.1 (2022-06-23) | |os |CentOS Linux 7 (Core) | |system |x86_64, linux-gnu | |ui |X11 | |language |en | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |America/Los_Angeles | |date |2022-10-28 | |pandoc |2.19.2 @ /software/c4/cbi/software/pandoc-2.19.2/bin/pandoc |

Dependencies

|package |old |new |Δ | |:-----------|:------|:-----------|:--| |R.utils |2.12.0 |2.12.0-9005 |* | |R.methodsS3 |1.8.2 |1.8.2 | | |R.oo |1.25.0 |1.25.0 | |

Revdeps

Failed to check (5)

|package |version |error |warning |note | |:------------------------------------|:-------|:-----|:-------|:----| |CINdex |? | | | | |fastreeR |1.0.0 |1 | | | |RcisTarget |1.16.0 |1 | |1 | |singleCellTK |? | | | | |sparrow |? | | | |

All (261)

|package |version |error |warning |note | |:--------------------------------------------------------------------------------|:--------------|:-----|:-------|:----| |acc |1.3.3 | | | | |ACNE |0.8.1 | | | | |acnr |1.0.0 | | | | |acroname |0.1.0 | | |2 | |ActivityIndex |0.3.7 | | | | |adjustedCurves |0.9.0 | |1 | | |affxparser |1.68.1 | |2 |2 | |alphahull |2.5 | | | | |arc |1.3 | | |1 | |arkdb |0.0.16 | | | | |aroma.affymetrix |3.2.1 | | | | |aroma.apd |0.6.1 | | | | |aroma.cn |1.7.0 | | | | |aroma.core |3.2.2 | | |1 | |aroma.light |3.26.0 | | |1 | |AUCell |1.18.1 | | |4 | |ausplotsR |1.2.7 | | | | |autonomics |1.4.0 |1 |1 |1 | |babel |0.3-0 | | | | |BANDITS |1.12.0 | | |3 | |bedr |1.0.7 | | | | |BgeeDB |2.22.3 | | | | |bigsnpr |1.11.4 | | |2 | |bigstep |1.0.3 | | | | |biomartr |1.0.2 | | | | |biscuiteer |1.10.0 |1 |1 |2 | |borealis |1.0.1 | | | | |bsseq |1.32.0 |1 | |4 | |calmate |0.13.0 | | | | |casabourse |2.0.0 | | |1 | |CB2 |1.3.4 | | |1 | |cellbaseR |1.20.1 | | | | |ChemoSpec |6.1.4 | | | | |ChemoSpec2D |0.5.0 | | | | |chillR |0.72.8 | | | | |cifti |0.4.5 | | |1 | |CINdex |? | | | | |circRNAprofiler |1.10.0 | | | | |civis |3.0.0 | | |1 | |clusterPower |0.7.0 | | | | |cmdfun |1.0.2 | | |1 | |cmsaf |3.4.4 | | |1 | |CNEr |1.32.0 | |1 |2 | |CNVgears |1.4.0 |1 | |2 | |cometr |0.2.0 | | |2 | |COTAN |1.0.0 |3 | |1 | |countyfloods |0.1.0 | | |2 | |COVID19 |3.0.2 | | | | |cRegulome |0.3.2 | | |1 | |cTRAP |1.14.1 | | |4 | |data.table |1.14.4 | | | | |DatabaseConnector |5.1.0 | | | | |ddPCRclust |1.16.0 | | |1 | |DeepBlueR |1.22.0 | | |1 | |DEGraph |1.48.0 | | |3 | |delayed |0.4.0 | | | | |detrendr |0.6.14 | | |2 | |DEWSeq |1.10.0 |1 | |2 | |dgpsi |2.1.5 | | | | |downsize |0.2.2 | | | | |dplR |1.7.4 | | | | |DropletUtils |1.16.0 | | |3 | |dwdradar |0.2.7 | | | | |dycdtools |0.4.2 | | | | |Eagle |2.5 | | |1 | |easyDifferentialGeneCoexpression |1.0 | | |1 | |edgar |2.0.5 | | | | |eegc |1.22.0 |1 |2 |3 | |EEM |1.1.1 | | | | |ELMER |2.20.0 | |2 |2 | |enrichTF |1.12.0 |3 | |1 | |EpiNow2 |1.3.2 | | |2 | |esATAC |1.18.0 |1 |1 |3 | |eudysbiome |1.26.0 | | |1 | |eurodata |1.5.0 | | | | |evclust |2.0.2 | | | | |ezknitr |0.6 | | |1 | |FAMoS |0.3.0 | | | | |fastai |2.2.0 | | | | |fastreeR |1.0.0 |1 | | | |FCPS |1.3.1 | | |1 | |FGNet |3.30.0 |1 |1 | | |findInGit |0.1.1 | | | | |fitteR |0.2.0 | | |1 | |flexrsurv |2.0.11 | | | | |FRASER |1.8.1 | |1 |2 | |FSK2R |0.1.3 | | | | |fslr |2.25.2 | | | | |GCSscore |1.10.0 |1 | |2 | |gdalUtils |2.0.3 | | | | |gde |0.2.0 | | | | |geneExpressionFromGEO |0.9 | | |1 | |geno2proteo |0.0.6 | | | | |GenomicDataCommons |1.20.3 | | | | |geodata |0.4-11 | | | | |GEOquery |2.64.2 | | |6 | |gifti |0.8.0 | | |1 | |glue |1.6.2 | | | | |gofCopula |0.4-1 | | | | |growthcleanr |2.0.2 | | | | |GSED |2.5 | | | | |GSODR |3.1.6 | | | | |GWASinspector |1.5.7.2 | | | | |HiCBricks |1.14.0 | | |1 | |HiCDCPlus |1.4.2 | | |1 | |hoardeR |0.9.4-2 | | |1 | |homologene |1.4.68.19.3.27 | | | | |htmldf |0.6.0 | | | | |HyPhy |1.0 | | |1 | |imagefluency |0.2.4 | | | | |installr |0.23.2 | | | | |ISAnalytics |1.6.2 | | |2 | |isobxr |1.0.1 | | | | |jagstargets |1.0.3 | | | | |joinXL |1.0.1 | | |1 | |jrc |0.5.1 | | | | |jsTreeR |2.2.0 | | |1 | |kaigiroku |0.5 | | | | |KnowSeq |1.10.2 | | |2 | |latrend |1.4.2 | | |1 | |link2GI |0.5-0 | | | | |listenv |0.8.0 | | | | |logger |0.2.2 | | |1 | |LSPFP |1.0.3 | | | | |macrocol |0.1.0 | | |1 | |MACSQuantifyR |1.10.0 | | |1 | |maftools |2.12.0 | | |5 | |mailR |0.8 | | | | |manhplot |1.1 | | | | |mcparallelDo |1.1.0 | | | | |metaboliteIDmapping |1.0.0 |1 | | | |MetaDBparse |2.0.0 | | |1 | |MethReg |1.6.0 | |1 |2 | |methylKit |1.22.0 | |1 |3 | |mglasso |0.1.2 | | | | |MIMSunit |0.11.2 | | | | |mirTarRnaSeq |1.4.0 |2 | |3 | |mistyR |1.4.0 | | |1 | |MPAgenomics |1.2.3 | | | | |msgbsR |1.20.0 | | |2 | |MungeSumstats |1.4.5 | | | | |muscData |1.10.0 | |1 |2 | |namedropR |2.4.1 | | | | |nc |2020.8.6 | | |1 | |nearBynding |1.6.0 | | |1 | |neo4jshell |0.1.2 | | | | |NEONiso |0.6.1 | | | | |neonstore |0.4.4 | | | | |neonUtilities |2.1.4 | | | | |netboost |2.4.1 |1 | |2 | |networktools |1.5.0 | | | | |neurobase |1.32.3 | | | | |nhdplusTools |0.5.7 | | | | |NPMLEmix |1.2 | | |2 | |numbat |1.0.2 | | |3 | |NxtIRFcore |1.2.1 | | |1 | |NxtIRFdata |1.2.0 | | | | |oce |1.7-10 | | |1 | |openCyto |2.8.4 | | |5 | |optimizeR |0.1.1 | | | | |ORFik |1.16.6 | | |3 | |OSCA.intro |1.4.1 |1 | |3 | |osrmr |0.1.36 | | | | |ottrpal |1.0.1 | | | | |packageRank |0.7.2 | | | | |pagoda2 |1.0.10 | | |1 | |PAMhm |0.1.2 | | | | |pathfindR |1.6.4 | | | | |paxtoolsr |1.30.0 | | |2 | |PhenotypeSimulator |0.3.4 | | |1 | |pins |1.0.3 | | | | |plinkQC |0.3.4 | | | | |plotHMM |2022.1.25 | | | | |plotKML |0.8-3 | | | | |pmparser |1.0.10 |1 | | | |PopGenReport |3.0.7 | | | | |portfolioBacktest |0.4.1 | | | | |pRecipe |0.4.0 | | | | |primirTSS |1.14.0 | |1 |1 | |profileplyr |1.12.0 | | | | |Prostar |1.28.6 | | | | |protti |0.5.0 | | | | |PSCBS |0.66.0 | | | | |psichomics |1.22.1 | | |2 | |PubBias |1.0 | | |2 | |pubtatordb |0.1.4 | | |1 | |pulsedSilac |1.9.1 |1 | | | |PureCN |2.2.0 | |1 |2 | |QDNAseq |1.32.0 | | |2 | |QGameTheory |0.1.2 | | |1 | |qrcode |0.1.4 | | | | |R.cache |0.16.0 | | | | |R.devices |2.17.1 | | |1 | |R.filesets |2.15.0 | | | | |R.huge |0.9.0 | | | | |R.matlab |3.7.0 | | | | |R.rsp |0.45.0 | |1 | | |rbiom |1.0.3 | | | | |rCBA |0.4.3 | | |1 | |RcisTarget |1.16.0 |1 | |1 | |rCNV |1.0.0 | | | | |Rcwl |1.12.0 | | |2 | |rddapp |1.3.0 | |1 | | |rdomains |0.2.1 | | | | |rdwd |1.6.0 | | |1 | |read.gt3x |1.2.0 | | | | |readmoRe |0.2-12 | | | | |recount3 |1.6.0 | | | | |recountmethylation |1.6.1 |2 |2 |4 | |regtools |1.7.0 | | |1 | |rehh |3.2.2 | | | | |ReportingTools |2.36.0 | | |1 | |restez |2.1.2 | | | | |RforProteomics |1.34.1 |1 |1 |1 | |RLSeq |1.2.0 |1 | | | |RMassBank |3.6.1 |1 | | | |RNAseq123 |1.20.0 |1 | |3 | |ROI.models.miplib |1.0-0 | | | | |RRphylo |2.7.0 | | | | |ruta |1.1.0 | | |1 | |rutifier |1.0.4 | | |1 | |sdmpredictors |0.2.13 | | | | |seeds |0.9.1 | | | | |seeker |1.0.13 | | | | |SEMID |0.4.0 | | | | |SensusR |2.3.1 | | | | |shinydrive |0.1.3 | | | | |shinymanager |1.0.410 | | | | |sigminer |2.1.8 | | | | |signatureSearchData |1.10.0 | | |1 | |simPATHy |0.6 | | | | |simpleSingleCell |1.20.0 |1 | |3 | |singleCellTK |? | | | | |snplist |0.18.2 | | | | |sparrow |? | | | | |starter |0.1.10 | | | | |studentlife |1.1.0 | | | | |systemPipeShiny |1.6.1 | | |2 | |tablet |0.5.8 | |1 |1 | |taxadb |0.1.6 | | | | |taxonomizr |0.9.3 | | | | |TCGAbiolinks |2.24.3 | |1 |3 | |TCGAutils |1.16.1 |2 | |3 | |TFEA.ChIP |1.16.0 |1 | |2 | |tinyProject |0.6.1 | | | | |tinyscholar |0.1.7 | | | | |tLagInterim |1.0 | | | | |tLagPropOdds |1.8 | | | | |tmle.npvi |0.10.0 | |1 |1 | |TNBC.CMS |1.12.0 | | | | |todor |0.1.2 | | | | |TraRe |1.4.0 | | |1 | |TrustVDJ |0.1.0 | | | | |Ularcirc |1.14.0 | |1 |3 | |UMI4Cats |1.6.0 | | | | |understandBPMN |1.1.1 | | |1 | |Uniquorn |2.16.0 | |1 |3 | |ViSEAGO |1.10.0 | |3 |2 | |voice |0.4.14 | | | | |wearables |0.8.1 | | | | |wrProteo |1.6.0 | | |1 |



HenrikBengtsson/R.utils documentation built on March 7, 2024, 9:37 a.m.