Files in HorridTom/hospitalflow
Analysis of Patient Flow in Hospitals
.Rbuildignore
.Rprofile
.gitignore
DESCRIPTION
NAMESPACE
R/ED_day_hour.R
R/boarding.R
R/ed_data.R
R/example-data-simulation.R
R/generic_standardise.R
R/get_ward_mapping.r
R/hf_utilities.R
R/imperfect-example-data-simulation.R
R/inpatient_data.R
R/make_flow_groups.R
R/mortality_timeseries.R
R/moves_table.R
R/occupancy_fct.R
R/plot_admissions_discharges_day_of_week.R
R/plot_average_ed_los_hour_of_day.R
R/plot_ed_4hourperf_occupancy.R
R/plot_ed_4hourperf_timeseries.R
R/plot_ed_4hourperf_timeseries_flow.R
R/plot_ed_arrival_occupancy_hour_of_day.R
R/plot_ed_attendance_demographics.R
R/plot_ed_attendances_timeseries_flow.R
R/plot_ed_los_distribution_admission.R
R/plot_ed_los_distribution_flow.R
R/plot_ed_occupancy_hour_of_week.R
R/plot_los_distribution_admission_method.R
R/plot_readmissions_timeseries.R
R/render_example_report.R
R/sankey_flow.R
R/spc_rules.R
R/spell_linkage.R
R/spell_table.R
R/standard_dataset.R
R/standardisation_data.R
R/survival_modelling.R
R/sysdata.rda
R/utils-pipe.R
cw-config/cw_data_import_list.rds
cw-config/ed/age_band_start_levels.rds
cw-config/ed/arrival_mode_levels.rds
cw-config/ed/attendance_category_levels.rds
cw-config/ed/attendance_disposal_levels.rds
cw-config/ed/column_mapping.rds
cw-config/ed/datetime_formats.rds
cw-config/ed/ethnic_category_levels.rds
cw-config/ed/gender_levels.rds
cw-config/ed/referral_source_levels.rds
cw-config/ed/triage_category_levels.rds
cw-config/inpatient/admission_method_levels.rds
cw-config/inpatient/age_band_levels.rds
cw-config/inpatient/age_band_start_levels.rds
cw-config/inpatient/column_mapping.rds
cw-config/inpatient/datetime_formats.rds
cw-config/inpatient/discharge_destination_levels.rds
cw-config/inpatient/discharge_method_levels.rds
cw-config/inpatient/ethnic_category_levels.rds
cw-config/inpatient/gender_levels.rds
cw-config/inpatient/hospital_site_levels.rds
cw-config/inpatient/main_specialty_levels.rds
cw-config/inpatient/patient_classification_levels.rds
cw-config/inpatient/source_of_admission_levels.rds
cw-config/ucc/age_band_start_levels.rds
cw-config/ucc/arrival_mode_levels.rds
cw-config/ucc/column_mapping.rds
cw-config/ucc/datetime_formats.rds
cw-config/ucc/gender_levels.rds
cw-config/ucc/referral_source_levels.rds
cw-config/ucc_backup/age_band_levels.rds
cw-config/ucc_backup/arrival_mode_levels.rds
cw-config/ucc_backup/column_mapping.rds
cw-config/ucc_backup/datetime_formats.rds
cw-config/ucc_backup/gender_levels.rds
cw-config/ucc_backup/referral_source_levels.rds
data-raw/hrg_mapping_dput.txt
data-raw/specialty_mapping_dput.txt
data/ed_data.rda
data/inpatient_data.rda
data/inpatient_data_joined.rds
data/moves_table.rda
data/spell_table.rda
example-data-raw/example_hospital_ed_data.csv
example-data-raw/example_hospital_inpatient_data.csv
hospitalflow.Rproj
inst/extdata/example-config/ed/attendance_category_levels.rds
inst/extdata/example-config/ed/column_mapping.rds
inst/extdata/example-config/ed/datetime_formats.rds
inst/extdata/example-config/ed/gender_levels.rds
inst/extdata/example-config/ed/referral_source_levels.rds
inst/extdata/example-config/ed/triage_category_levels.rds
inst/extdata/example-config/example_import_list.rds
inst/extdata/example-config/inpatient/column_mapping.rds
inst/extdata/example-config/inpatient/datetime_formats.rds
inst/extdata/example-config/inpatient/discharge_destination_levels.rds
inst/extdata/example-config/inpatient/gender_levels.rds
inst/extdata/example-config/inpatient/source_of_admission_levels.rds
inst/extdata/example-config/inpatient/ward_type_mapping.rds
inst/extdata/example_hospital_ed_data.csv
inst/extdata/example_hospital_inpatient_data.csv
lgt-config/AdmMethod.csv
lgt-config/LGT_Analysis_Data_Import.Rmd
lgt-config/aw/admission_method_levels.rds
lgt-config/aw/age_band_start_levels.rds
lgt-config/aw/column_mapping.rds
lgt-config/aw/datetime_formats.rds
lgt-config/aw/ethnic_category_levels.rds
lgt-config/aw/gender_levels.rds
lgt-config/aw/main_specialty_levels.rds
lgt-config/ed/age_band_start_levels.rds
lgt-config/ed/arrival_mode_levels.rds
lgt-config/ed/attendance_category_levels.rds
lgt-config/ed/attendance_disposal_levels.rds
lgt-config/ed/column_mapping.rds
lgt-config/ed/datetime_formats.rds
lgt-config/ed/ethnic_category_levels.rds
lgt-config/ed/gender_levels.rds
lgt-config/ed/lg_col_mapping.rds
lgt-config/ed/referral_source_levels.rds
lgt-config/ed/triage_category_levels.rds
lgt-config/inpatient/admission_method_levels.rds
lgt-config/inpatient/age_band_start_levels.rds
lgt-config/inpatient/column_mapping.rds
lgt-config/inpatient/datetime_formats.rds
lgt-config/inpatient/ethnic_category_levels.rds
lgt-config/inpatient/gender_levels.rds
lgt-config/inpatient/main_specialty_levels.rds
lgt-config/inpatient/ward_type_mapping.rds
lgt-config/lgt_import_list.rds
lgt-config/lgt_path_import_list.rds
lgt-config/ncf/admission_method_levels.rds
lgt-config/ncf/age_band_start_levels.rds
lgt-config/ncf/column_mapping.rds
lgt-config/ncf/datetime_formats.rds
lgt-config/ncf/ethnic_category_levels.rds
lgt-config/ncf/gender_levels.rds
lgt-config/ncf/main_specialty_levels.rds
lgt-config/ucc/age_band_start_levels.rds
lgt-config/ucc/ethnic_category_levels.rds
man/ED_day_hour.Rd
man/ED_day_hour_plot.Rd
man/add_directorate_variable.Rd
man/add_spell_variables.Rd
man/bind_into_facilities.Rd
man/convert_rds_cols_to_char.Rd
man/ed_data.Rd
man/evaluate_predictions.Rd
man/filter_config_list.Rd
man/format_control_chart.Rd
man/get_colname_mapping.Rd
man/get_contingency_table.Rd
man/get_discharge_probability.Rd
man/get_factor_recode.Rd
man/get_imperfect_simulated_data_as_list.Rd
man/get_import_col_types.Rd
man/get_inpatient_snapshot.Rd
man/get_poisson_binomial_characteristic_values.Rd
man/get_residual_occupancy.Rd
man/get_simulated_data_as_list.Rd
man/get_ward_mapping.Rd
man/import_and_standardise.Rd
man/import_standardise_bind.Rd
man/inpatient_data.Rd
man/lgt_col_mapping.Rd
man/make_adm_disch_cols.Rd
man/make_adm_type_col.Rd
man/make_episode_ids.Rd
man/make_flow_groups.Rd
man/make_moves_table.Rd
man/make_spell_number.Rd
man/make_spell_table.Rd
man/make_survival_function.Rd
man/mortality_timeseries.Rd
man/moves_table.Rd
man/occupancy.Rd
man/occupancy_on_arrival.Rd
man/pipe.Rd
man/plot_admissions_discharges_day_of_week.Rd
man/plot_average_ed_los_hour_of_day.Rd
man/plot_ed_4hourperf_occupancy.Rd
man/plot_ed_4hourperf_timeseries.Rd
man/plot_ed_4hourperf_timeseries_flow.Rd
man/plot_ed_arrival_occupancy_hour_of_day.Rd
man/plot_ed_attendance_demographics.Rd
man/plot_ed_attendances_timeseries_flow.Rd
man/plot_ed_los_distribution_admission.Rd
man/plot_ed_los_distribution_flow.Rd
man/plot_ed_occupancy_hour_of_week.Rd
man/plot_flow_diagram.Rd
man/plot_los_distribution_admission_method.Rd
man/plot_readmissions_timeseries.Rd
man/predict_residual_occupancy.Rd
man/render_example_report.Rd
man/run_S_func_model.Rd
man/spell_intersections.Rd
man/spell_table.Rd
man/spell_type.Rd
man/spell_variables.Rd
man/standardise_column_names.Rd
packrat/packrat.lock
packrat/packrat.opts
packrat/src/packrat/f18e2607af2935508d7f04ac91d96b5f3bfe09ae.tar.gz
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
survival-analysis/Cox_regression_analysis.Rmd
survival-analysis/Cox_regression_analysis_2.Rmd
survival-analysis/Cox_regression_analysis_ALT.Rmd
survival-analysis/Los_survival_analysis.Rmd
tests/.gitignore
tests/figs/deps.txt
tests/testthat.R
tests/testthat/from_spell_variables.rds
tests/testthat/from_spell_variables_new.rds
tests/testthat/make_generic_standardise_test_data.R
tests/testthat/test-boarding.R
tests/testthat/test-plot_admissions_discharges_day_of_week.R
tests/testthat/test-plot_average_ed_los_hour_of_day.R
tests/testthat/test-plot_ed_4hourperf_occupancy.R
tests/testthat/test-plot_ed_4hourperf_timeseries.R
tests/testthat/test-plot_ed_arrival_occupancy_hour_of_day.R
tests/testthat/test-plot_ed_attendance_demographics.R
tests/testthat/test-plot_ed_attendances_timeseries_flow.R
tests/testthat/test-plot_ed_los_distribution_admission.R
tests/testthat/test-plot_ed_los_distribution_flow.R
tests/testthat/test-plot_ed_occupancy_hour_of_week.R
tests/testthat/test-plot_los_distribution_admission_method.R
tests/testthat/test-plot_readmissions_timeseries.R
tests/testthat/test_deaths_measure.R
tests/testthat/test_directorate_addition.R
tests/testthat/test_ed_day_hour.R
tests/testthat/test_import_and_standardise.R
tests/testthat/test_import_standardise_bind.R
tests/testthat/test_make_spell.R
tests/testthat/test_occupancy_hr.R
tests/testthat/testdata/boarding/sample_inpatient_data.rds
tests/testthat/testdata/deaths_measure_test/deaths_measure_test.rds
tests/testthat/testdata/ed_los_flgrps/correct_answers.rds
tests/testthat/testdata/ed_los_flgrps/ed_los_flgrps.rds
tests/testthat/testdata/generic_standardise/ed1.csv
tests/testthat/testdata/generic_standardise/ed2.csv
tests/testthat/testdata/generic_standardise/ed_config/column_mapping.rds
tests/testthat/testdata/generic_standardise/ed_config/datetime_formats.rds
tests/testthat/testdata/generic_standardise/ed_config/gender_levels.rds
tests/testthat/testdata/generic_standardise/ip1.csv
tests/testthat/testdata/generic_standardise/ip2.csv
tests/testthat/testdata/generic_standardise/ip_config/column_mapping.rds
tests/testthat/testdata/generic_standardise/ip_config/datetime_formats.rds
tests/testthat/testdata/occupancy/occupancy_test.rds
tests/testthat/testdata/plot_average_ed_los_hour_of_day/correct_answers.rds
tests/testthat/testdata/plot_average_ed_los_hour_of_day/plot_average_ed_los_hour_of_day.rds
tests/testthat/testdata/plot_ed_4hourperf_timeseries/plot_ed_4hourperf_timeseries.rds
tests/testthat/testdata/plot_ed_arrival_occupancy_hour_of_day/occupancy_arrival_test.rds
tests/testthat/testdata/plot_ed_attendance_demographics/attend_adm_age_sex_test.rds
tests/testthat/testdata/plot_ed_attendances_timeseries_flow/correct_answers.rds
tests/testthat/testdata/plot_ed_attendances_timeseries_flow/weekly_ed_flgrp.rds
tests/testthat/testdata/plot_ed_los_distribution_admission/constructed_spells_los_att_adm.rds
tests/testthat/testdata/plot_ed_los_distribution_admission/correct_answers_spelltable_data_los_att_adm.rds
tests/testthat/testdata/plot_ed_los_distribution_admission/synthetic_spelltable_sample.rds
tests/testthat/testdata/plot_ed_los_distribution_flow/correct_answers.rds
tests/testthat/testdata/plot_ed_los_distribution_flow/plot_ed_los_distribution_flow.rds
tests/testthat/testdata/plot_ed_occupancy_hour_of_week/test_occupancy_hr_day.rds
tests/testthat/testdata/plot_los_distribution_admission_method/correct_answers.rds
tests/testthat/testdata/plot_los_distribution_admission_method/los_distrib_synthetic_spelltable_sample.rds
tests/testthat/testdata/plot_readmissions_timeseries/dt_readmission_test.rds
tests/testthat/testdata/spell_linkage/correct_answers.rds
tests/testthat/testdata/spell_linkage/ed_data_age_sex.rds
tests/testthat/testdata/spell_linkage/inpatient_data_age_sex.rds
vignettes/example-report.Rmd
