Man pages for HuishengLi-ccnu/scDEA
Several popular methods executing differential expression analysis of single-cell.

data_processData process
Execute_BASiCSExecute BASiCS differential expression analysis
Execute_BPSCExecute BPSC differential expression analysis
Execute_DECENTExecute DECENT differential expression analysis
Execute_DESeq2Execute DESeq2 differential expression analysis
Execute_DEsingleExecut DEsingle differential expression analysis
Execute_DTWscoreExecute DTWscore differential expression analysis
Execute_edgeRExecute edgeR differential expression ananlysis.
Execute_LinnormExecute Linnorm differential expression analysis
Execute_M3DropExecute M3Drop differential expression analysis.
Execute_MASTExecute MAST differential expression analysis.
Execute_monocleExecute monocle differential expression analysis.
Execute_scDDExecute scDD differential expression analysis.
Execute_TtestExecute T-test differential expression analysis.
Execute_WilcoxonExecute Wilcoxon differential expression analysis.
normalizedNormalized process
sceA small subset of the scRNA-seq data from Zeisel et.al....
sce_BASiCSA small subset of the scRNA-seq data
sce_largeThe scRNA-seq data from Tung et.al. (2017)
SpikeInfoThe true of spike-in, ERCC, information.
SpikeInfo_BASiCSThe true of spike-in, ERCC, information.
VisualizationVisualization of differential expression analysis
HuishengLi-ccnu/scDEA documentation built on Aug. 14, 2018, 11:06 a.m.