API for HuntsmanCancerInstitute/hciR
RNA-seq workflows at HCI

Global functions
%>% Man page
annotate_results Man page Source code
as_matrix Man page Source code
check_contrasts Man page Source code
deseq_from_tibble Man page Source code
drop_empty_columns Man page Source code
extract_samples Man page Source code
fgsea_all Man page Source code
filter_counts Man page Source code
filter_top_counts Man page Source code
fisher_all Man page Source code
fisher_barplot Man page Source code
gage_all Man page Source code
gdc_coldata Man page Source code
gdc_rowdata Man page Source code
gene_intersect Man page Source code
order_samples Man page Source code
palette255 Man page Source code
pasilla Man page
plot_biotypes Man page Source code
plot_counts Man page Source code
plot_dist Man page Source code
plot_fgsea Man page Source code
plot_filter Man page Source code
plot_gage Man page Source code
plot_genes Man page Source code
plot_gsea Man page Source code
plot_interactions Man page Source code
plot_ma Man page Source code
plot_pca Man page Source code
plot_volcano Man page Source code
r_log Man page Source code
read_RSEM Man page Source code
read_RnaSeqMetrics Man page Source code
read_STAR Man page Source code
read_biomart Man page Source code
read_featureCounts Man page Source code
read_gsea Man page Source code
read_gsea_file Man page Source code
read_idxstats Man page Source code
read_sample_files Man page Source code
reexports Man page
results2 Man page Source code
results_all Man page Source code
sort_counts Man page Source code
sort_samples Man page Source code
summary_deseq Man page Source code
summary_tibble Man page Source code
top3 Man page Source code
top_counts Man page Source code
top_genes Man page Source code
write_deseq Man page Source code
write_gsea_rnk Man page Source code
HuntsmanCancerInstitute/hciR documentation built on Nov. 6, 2019, 12:11 p.m.