plot_gsea: Plot GSEA output

In HuntsmanCancerInstitute/hciR: RNA-seq workflows at HCI

Plot GSEA output

Description

Plot heatmap with enrichment scores by contrast

Usage

plot_gsea(x, trim = 70, n_sets, nes = TRUE, ...)

Arguments

x	list with two or more link{read_gsea} tables
trim	trim long set names, default more than 70 characters
n_sets	display contrasts sharing n or more sets for n > 1. If n = 1, then only plot unique sets. If missing, then plots all sets, default.
nes	plot NES (or ES if FALSE)
...	other options passed to pheatmap

Author(s)

Chris Stubben

Examples

## Not run: 
  data(msig)
  x <- list( X1= read_gsea("gsea1.txt"), X2 = read_gsea("gsea2.txt") )
  plot_gsea(x)
 
## End(Not run)

HuntsmanCancerInstitute/hciR documentation built on March 26, 2024, 3:09 a.m.