IGBB/PAST: Pathway Association Study Tool (PAST)

PAST takes GWAS output and assigns SNPs to genes, uses those genes to find pathways associated with the genes, and plots pathways based on significance. Implements methods for reading GWAS input data, finding genes associated with SNPs, calculating enrichment score and significance of pathways, and plotting pathways.

Getting started

Package details

Bioconductor views GeneSetEnrichment Pathways
LicenseGPL (>=3) + file LICENSE
URL https://github.com/IGBB/past
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
IGBB/PAST documentation built on July 31, 2020, 8:11 p.m.