Files in JLP-BioInf/comradesOO
Analysis of RNA Crosslinking Data
DESCRIPTION
NAMESPACE
R/clusterrnaCrosslink.R
R/clusterrnaCrosslinkMethodsAndHelpers.R
R/commonHelpersAndMethods.R
R/commonStatsAndPlots.R
R/foldrnaCrosslink.R
R/foldrnaCrosslinkMethodsAndHelpers.R
R/genericMethods.R
R/rnaCrosslinkDataSet.R
R/rnaCrosslinkDataSetMethodsAndHelpers.R
R/rnaCrosslinkOO-package.R
R/rnaCrosslinkOO.R
README.md
inst/CITATION
inst/extdata/18S.fasta
inst/extdata/c1.txt
inst/extdata/reactivities.txt
inst/extdata/ribovision18S.txt
inst/extdata/s1.txt
man/InputFiles.Rd
man/InputToGRanges.Rd
man/clusterGrangesList.Rd
man/clusterGrangesList_set.Rd
man/clusterNumbers.Rd
man/clusterTableFolded.Rd
man/clusterTableList.Rd
man/clusterTableList_set.Rd
man/clusterrnaCrosslink.Rd
man/compareKnown.Rd
man/compareKnownStructures.Rd
man/featureInfo.Rd
man/findBasePairsRNAcoFold2.Rd
man/findBasePairsRNAfold.Rd
man/findBasePairsRNAfold2.Rd
man/foldrnaCrosslink.Rd
man/getAdjacancyMat.Rd
man/getClusterClusterShortRangeWhole.Rd
man/getData.Rd
man/getInteractions.Rd
man/getMatrices.Rd
man/getReverseInteractions.Rd
man/group.Rd
man/makeExamplernaCrosslinkDataSet.Rd
man/matrixList.Rd
man/matrixList_set.Rd
man/plotClusterAgreement.Rd
man/plotClusterAgreementHeat.Rd
man/plotCombinedMatrix.Rd
man/plotComparisonArc.Rd
man/plotEnsemblePCA.Rd
man/plotInteractions.Rd
man/plotInteractionsAverage.Rd
man/plotMatrices.Rd
man/plotMatricesAverage.Rd
man/plotStructure.Rd
man/printClustersFast.Rd
man/readNumbers.Rd
man/rnaCrosslinkDataSet.Rd
man/rnaCrosslinkOO.Rd
man/rnaSize.Rd
man/rnas.Rd
man/sampleChimeras.Rd
man/sampleNames.Rd
man/sampleTable.Rd
man/subsetInputList2.Rd
man/swapInputs.Rd
man/swapInputs2.Rd
man/swapInputs3.Rd
man/topInteracters.Rd
man/topInteractions.Rd
man/topTranscripts.Rd
man/trimClusters.Rd
tests/testthat.R
vignettes/comradesProtocol.jpg
vignettes/inputFileSchematic.jpg
vignettes/rnaCrosslinkOO.Rmd
vignettes/vigentte_arc.jpg
vignettes/vigentte_pca.jpg
vignettes/vignette_domain.jpg
