README.md

In Japrin/STARTRAC: Single T-cell Analysis by Rna-seq and Tcr TRACking

STARTRAC

STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking).

Installation

To install this package, simply:

install.packages("devtools")
devtools::install_github("Japrin/STARTRAC")

Example

Read input data:

dat.file <- system.file("extdata/example.cloneDat.Zhang2018.txt",package = "Startrac")
in.dat <- read.table(dat.file,stringsAsFactors = F,head=T)

run the STARTRAC pipeline:

out <- Startrac.run(in.dat, proj="CRC", cores=NULL,verbose=F)

More information can be found in the vignettes. If you use this package, please cite this Nature paper. Thank you!

Japrin/STARTRAC documentation built on Dec. 4, 2023, 1:35 a.m.