README.md

In JayAchar/tbgeneratr: tbgenratr: tools for generating new TB variables

tbgeneratr

Generate variables from cleaned MSF TB programme data

Introduction

The R package tbgeneratr was developed to be used in synergy with tbcleanr to simplify cleaning and processing for routinely collected TB programme data. tbgeneratr compliments tbcleanr output data frames by processing and generating more complex data points, such as individual patient culture conversion dates. Following development of tbreportr, a simplified workflow from raw data to automated reporting will be realised through tbcleanr, tbgeneratr and tbreportr.

Installation

You can install the released version of tbgeneratr from Github with:

require(devtools)
install_github("JayAchar/tbgeneratr")
library(tbgeneratr)

Important functions

Function Use it for adm_generator() Calculate age and BMI variables, and split start treatment date to allow easier analysis adm_lab_generator() Calculate baseline smear and culture status, conversion dates, and baseline drug susceptbility results

JayAchar/tbgeneratr documentation built on Oct. 13, 2019, 1:47 a.m.