Files in JenniNiku/gllvm
Generalized Linear Latent Variable Models

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md R/TMBtrait.R R/aicc.gllvm.R R/anova.gllvm.R R/coef.gllvm.R R/coefplot.gllvm.R R/confint.gllvm.R R/ecoCoefs.gllvm.R R/getEnvironCov.gllvm.R R/getLV.gllvm.R R/getPredictErr.gllvm.R R/getResidualCor.gllvm.R R/getResidualCov.gllvm.R R/gllvm.R R/gllvm.TMB.R R/gllvm.VA.R R/gllvm.auxiliary.R R/gllvm.iter.R R/gllvm.makeform.R R/logLik.gllvm.R R/ordiplot.gllvm.R R/plot.gllvm.R R/predict.gllvm.R R/predictLVs.gllvm.R R/print.gllvm.R R/randomCoefplot.R R/residuals.gllvm.R R/se.gllvm.R R/simulate.gllvm.R R/summary.gllvm.R R/vcov.gllvm.R R/zzz.R README.md
data/Skabbholmen.RData
data/eSpider.RData
data/microbialdata.RData
data/sim_bacteria.RData
docs/404.html
docs/articles/index.html
docs/articles/vignette1.html
docs/articles/vignette1_files/figure-html/unnamed-chunk-11-1.png
docs/articles/vignette1_files/figure-html/unnamed-chunk-12-1.png
docs/articles/vignette1_files/figure-html/unnamed-chunk-13-1.png
docs/articles/vignette1_files/figure-html/unnamed-chunk-13-2.png
docs/articles/vignette1_files/figure-html/unnamed-chunk-14-1.png
docs/articles/vignette1_files/figure-html/unnamed-chunk-18-1.png
docs/articles/vignette1_files/figure-html/unnamed-chunk-18-2.png
docs/articles/vignette1_files/figure-html/unnamed-chunk-18-3.png
docs/articles/vignette1_files/figure-html/unnamed-chunk-19-1.png
docs/articles/vignette1_files/figure-html/unnamed-chunk-19-2.png
docs/articles/vignette1_files/figure-html/unnamed-chunk-19-3.png
docs/articles/vignette1_files/figure-html/unnamed-chunk-23-1.png
docs/articles/vignette1_files/figure-html/unnamed-chunk-25-1.png
docs/articles/vignette1_files/figure-html/unnamed-chunk-26-1.png
docs/articles/vignette1_files/figure-html/unnamed-chunk-26-2.png
docs/articles/vignette1_files/figure-html/unnamed-chunk-30-1.png
docs/articles/vignette1_files/figure-html/unnamed-chunk-30-2.png
docs/articles/vignette2.html
docs/articles/vignette2_files/figure-html/unnamed-chunk-10-1.png
docs/articles/vignette2_files/figure-html/unnamed-chunk-14-1.png
docs/articles/vignette2_files/figure-html/unnamed-chunk-15-1.png
docs/articles/vignette2_files/figure-html/unnamed-chunk-18-1.png
docs/articles/vignette2_files/figure-html/unnamed-chunk-19-1.png
docs/articles/vignette2_files/figure-html/unnamed-chunk-22-1.png
docs/articles/vignette2_files/figure-html/unnamed-chunk-3-1.png
docs/articles/vignette2_files/figure-html/unnamed-chunk-7-1.png
docs/articles/vignette2_files/figure-html/unnamed-chunk-8-1.png
docs/articles/vignette2_files/figure-html/unnamed-chunk-8-2.png
docs/articles/vignette2_files/figure-html/unnamed-chunk-8-3.png
docs/articles/vignette2_files/figure-html/unnamed-chunk-9-1.png
docs/articles/vignette3.html
docs/articles/vignette3_files/figure-html/unnamed-chunk-11-1.png
docs/articles/vignette3_files/figure-html/unnamed-chunk-11-10.png
docs/articles/vignette3_files/figure-html/unnamed-chunk-11-2.png
docs/articles/vignette3_files/figure-html/unnamed-chunk-11-3.png
docs/articles/vignette3_files/figure-html/unnamed-chunk-11-4.png
docs/articles/vignette3_files/figure-html/unnamed-chunk-11-5.png
docs/articles/vignette3_files/figure-html/unnamed-chunk-11-6.png
docs/articles/vignette3_files/figure-html/unnamed-chunk-11-7.png
docs/articles/vignette3_files/figure-html/unnamed-chunk-11-8.png
docs/articles/vignette3_files/figure-html/unnamed-chunk-11-9.png
docs/articles/vignette3_files/figure-html/unnamed-chunk-16-1.png
docs/articles/vignette3_files/figure-html/unnamed-chunk-17-1.png
docs/articles/vignette3_files/figure-html/unnamed-chunk-18-1.png
docs/articles/vignette3_files/figure-html/unnamed-chunk-5-1.png
docs/articles/vignette3_files/figure-html/unnamed-chunk-8-1.png
docs/articles/vignette4.html
docs/articles/vignette4_files/figure-html/unnamed-chunk-11-1.png
docs/articles/vignette4_files/figure-html/unnamed-chunk-11-2.png
docs/articles/vignette4_files/figure-html/unnamed-chunk-17-1.png
docs/articles/vignette4_files/figure-html/unnamed-chunk-18-1.png
docs/articles/vignette4_files/figure-html/unnamed-chunk-20-1.png
docs/articles/vignette4_files/figure-html/unnamed-chunk-21-1.png
docs/articles/vignette4_files/figure-html/unnamed-chunk-22-1.png
docs/articles/vignette4_files/figure-html/unnamed-chunk-6-1.png
docs/articles/vignette4_files/figure-html/unnamed-chunk-8-1.png
docs/articles/vignette5.html
docs/articles/vignette5_files/figure-html/quad_plot-1.png
docs/articles/vignette6.html
docs/articles/vignette6_files/figure-html/unnamed-chunk-10-1.png
docs/articles/vignette6_files/figure-html/unnamed-chunk-15-1.png
docs/articles/vignette6_files/figure-html/unnamed-chunk-7-1.png
docs/articles/vignette6_files/figure-html/unnamed-chunk-9-1.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/AICc.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/Rplot003.png
docs/reference/Rplot004.png
docs/reference/Rplot005.png
docs/reference/Rplot006.png
docs/reference/Rplot007.png
docs/reference/Rplot008.png
docs/reference/Rplot009.png
docs/reference/Rplot010.png
docs/reference/Rplot011.png
docs/reference/Rplot012.png
docs/reference/Rplot013.png
docs/reference/Rplot014.png
docs/reference/Rplot015.png
docs/reference/Rplot016.png
docs/reference/Rplot017.png
docs/reference/Rplot018.png
docs/reference/Rplot019.png
docs/reference/Rplot020.png
docs/reference/Skabbholmen.html
docs/reference/anova.gllvm.html
docs/reference/coefplot.gllvm-1.png
docs/reference/coefplot.gllvm.html
docs/reference/confint.gllvm.html
docs/reference/eSpider.html
docs/reference/ecoCoefs.html
docs/reference/getLV.gllvm.html
docs/reference/getPredictErr.gllvm.html
docs/reference/getResidualCor.gllvm.html
docs/reference/getResidualCov.gllvm.html
docs/reference/gllvm-1.png
docs/reference/gllvm-10.png
docs/reference/gllvm-11.png
docs/reference/gllvm-12.png
docs/reference/gllvm-13.png
docs/reference/gllvm-14.png
docs/reference/gllvm-15.png
docs/reference/gllvm-16.png
docs/reference/gllvm-17.png
docs/reference/gllvm-18.png
docs/reference/gllvm-19.png
docs/reference/gllvm-2.png
docs/reference/gllvm-20.png
docs/reference/gllvm-3.png
docs/reference/gllvm-4.png
docs/reference/gllvm-5.png
docs/reference/gllvm-6.png
docs/reference/gllvm-7.png
docs/reference/gllvm-8.png
docs/reference/gllvm-9.png
docs/reference/gllvm.html
docs/reference/index.html
docs/reference/logLik.gllvm.html
docs/reference/microbialdata.rd
docs/reference/ordiplot.gllvm-1.png
docs/reference/ordiplot.gllvm.html
docs/reference/plot.gllvm.html
docs/reference/predict.gllvm.html
docs/reference/predictLVs.gllvm.html
docs/reference/randomCoefplot.gllvm.html
docs/reference/residuals.gllvm.html
docs/reference/se.gllvm.html
docs/reference/simulate.gllvm.html
docs/reference/summary.gllvm.html
docs/reference/vcov.gllvm.html
docs/sitemap.xml
gllvm.Rproj
inst/CITATION
man/AICc.Rd man/Skabbholmen.Rd man/anova.gllvm.Rd man/coefplot.gllvm.Rd man/confint.gllvm.Rd man/eSpider.Rd man/ecoCoefs.Rd man/getEnvironCov.gllvm.Rd man/getLV.gllvm.Rd man/getPredictErr.gllvm.Rd man/getResidualCor.gllvm.Rd man/getResidualCov.gllvm.Rd man/gllvm.Rd man/logLik.gllvm.Rd man/microbialdata.rd man/ordiplot.gllvm.Rd man/plot.gllvm.Rd man/predict.gllvm.Rd man/predictLVs.gllvm.Rd man/randomCoefplot.gllvm.Rd man/residuals.gllvm.Rd man/se.gllvm.Rd man/simulate.gllvm.Rd man/summary.gllvm.Rd man/vcov.gllvm.Rd
src/Makevars
src/distrib.h
src/gllvm.cpp
tests/testthat.R tests/testthat/test-fitgllvm.R
vignettes/RRGLM.RData
vignettes/RRGLMb1.RData
vignettes/fit_4th.Rdata
vignettes/ftCGLLVM.RData
vignettes/ftComTol.RData
vignettes/ftEqTol.RData
vignettes/ftNULL.RData
vignettes/ftNULLpois.RData
vignettes/ftUneqTol.RData
vignettes/ftX.RData
vignettes/ftXi.RData
vignettes/ftXph.RData
vignettes/vignette1.Rmd vignettes/vignette2.rmd vignettes/vignette3.rmd vignettes/vignette4.rmd vignettes/vignette5.Rmd vignettes/vignette6.Rmd
JenniNiku/gllvm documentation built on April 17, 2024, 5:36 p.m.