Files in Jfortin1/crisprBase
Base functions and classes for CRISPR gRNA design

.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/AllGenerics.R R/BaseEditor-class.R R/CrisprNickase-class.R R/CrisprNuclease-class.R R/Nickase-class.R R/Nuclease-class.R R/annotateMismatches.R R/arithmetics.R R/converters.R R/data.R R/rebase.R
R/sysdata.rda
R/utils.R README.Rmd README.md
data/AsCas12a.rda
data/BE4max.rda
data/CasRx.rda
data/SaCas9.rda
data/SpCas9.rda
data/SpGCas9.rda
data/enAsCas12a.rda
data/restrictionEnzymes.rda
inst/CITATION
inst/NEWS.Rd
inst/be/b4max.csv
inst/be/readme.txt
inst/createSysdata.R
inst/enzymes/allenz.txt
inst/enzymes/download.txt
inst/enzymes/notation.txt
inst/enzymes/process.R inst/generateObjects.R
inst/pams/cas12a/41587_2018_11_MOESM4_ESM.xlsx
inst/pams/cas12a/addDoench.R
inst/pams/cas12a/cas12a.pams.rda
inst/pams/cas12a/doench/encas12a.scores.doench.rda
inst/pams/cas12a/doench/files/myl1_myc1_11.fasta
inst/pams/cas12a/doench/files/myl1_myc1_12.fasta
inst/pams/cas12a/doench/files/myl1_myc1_21.fasta
inst/pams/cas12a/doench/files/myl1_myc1_22.fasta
inst/pams/cas12a/doench/files/results11.txt
inst/pams/cas12a/doench/files/results12.txt
inst/pams/cas12a/doench/files/results21.txt
inst/pams/cas12a/doench/files/results22.txt
inst/pams/cas12a/doench/process.R
inst/pams/cas12a/download.txt
inst/pams/cas12a/processPamsCas12a.R
inst/pams/cas9/cas9.pams.rda
inst/pams/cas9/generatePamsCas9.R inst/paths.R
inst/slides/classes.pptx
man/AsCas12a.Rd man/BE4max.Rd man/BaseEditor-class.Rd man/CasRx.Rd man/CrisprNickase-class.Rd man/CrisprNuclease-class.Rd man/Nickase-class.Rd man/Nuclease-class.Rd man/SaCas9.Rd man/SpCas9.Rd man/SpGCas9.Rd man/annotateMismatches.Rd man/enAsCas12a.Rd man/extractPamFromTarget.Rd man/extractProtospacerFromTarget.Rd man/getAvailableCrisprNucleases.Rd man/getPamRanges.Rd man/getProtospacerRanges.Rd man/getTargetRanges.Rd man/plotEditingWeights.Rd man/reexports.Rd man/restrictionEnzymes.Rd tests/testthat.R tests/testthat/test-arithmetics.R tests/testthat/test-crisprnuclease-class.R tests/testthat/test-nuclease-class.R vignettes/crisprBase.Rmd vignettes/figures/cut_sites.pdf
vignettes/figures/cut_sites.pptx
vignettes/figures/cut_sites.svg
vignettes/figures/deprecated/nucleasesv1.pptx
vignettes/figures/drafts/nucleases_be.pptx
vignettes/figures/drafts/protospacer.pptx
vignettes/figures/enzymes.pdf
vignettes/figures/enzymes.pptx
vignettes/figures/enzymes.svg
vignettes/figures/nickases.pdf
vignettes/figures/nickases.pptx
vignettes/figures/nickases.svg
vignettes/figures/nucleases.pdf
vignettes/figures/nucleases.pptx
vignettes/figures/nucleases.svg
vignettes/figures/nucleasesBaseEditor.pdf
vignettes/figures/nucleasesBaseEditor.pptx
vignettes/figures/nucleasesBaseEditor.svg
vignettes/figures/resave.sh
vignettes/references.bib
Jfortin1/crisprBase documentation built on July 20, 2022, 2:44 a.m.