Man pages for Jfortin1/crisprBase
Base functions and classes for CRISPR gRNA design
| annotateMismatches | Annotate mismatches between spacer and protospacer sequences |
| AsCas12a | AsCas12a CrisprNuclease object |
| BaseEditor-class | An S4 class to represent a base editor |
| BE4max | BE4max BaseEditor object |
| CasRx | CasRx CrisprNuclease object |
| CrisprNickase-class | An S4 class to represent a CRISPR nickase. |
| CrisprNuclease-class | An S4 class to represent a CRISPR nuclease. |
| enAsCas12a | enAsCas12a CrisprNuclease object |
| extractPamFromTarget | Extract PAM sequences from target sequences |
| extractProtospacerFromTarget | Extract protospacer sequences from target sequences |
| getAvailableCrisprNucleases | Return list of available CrisprNuclease objects in crisprBase |
| getCutSiteFromPamSite | Return cut site coordinates from PAM site coordinates |
| getCutSiteRanges | Construct a cut site GRanges from a list of PAM sites |
| getPamRanges | Construct a PAM GRanges from a list of PAM sites |
| getProtospacerRanges | Construct a protospacer GRanges from a list of PAM sites |
| getTargetRanges | Construct a target GRanges from a list of PAM sites |
| Nickase-class | An S4 class to represent a nickase |
| Nuclease-class | An S4 class to represent a nuclease. |
| plotEditingWeights | Quick plot to visualize editing weights |
| reexports | Objects exported from other packages |
| restrictionEnzymes | List of Nuclease objects representing common restriction... |
| SaCas9 | SaCas9 CrisprNuclease object |
| SpCas9 | SpCas9 CrisprNuclease object |
| SpGCas9 | SpGCas9 CrisprNuclease object |
