Jfortin1/crisprBowtie: Bowtie-based alignment of CRISPR gRNA spacer sequences

Provides a user-friendly interface to map on-targets and off-targets of CRISPR gRNA spacer sequences using bowtie. The alignment is fast, and can be performed using either commonly-used or custom CRISPR nucleases. The alignment can work with any reference or custom genomes. Both DNA- and RNA-targeting nucleases are supported.

Getting started

Package details

Bioconductor views Alignment CRISPR FunctionalGenomics
Maintainer
LicenseMIT + file LICENSE
Version1.1.1
URL https://github.com/Jfortin1/crisprBowtie
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("Jfortin1/crisprBowtie")
Jfortin1/crisprBowtie documentation built on May 12, 2022, 8:08 a.m.