API for JokingHero/ORFik
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Global functions
ORFik Man page
ORFik-package Man page
ORFs_as_List Source code
addFirstCdsOnLeaderEnds Man page Source code
addNewTSSOnLeaders Man page Source code
assign_annotations Man page Source code
bedToGR Man page Source code
cageFromFile Man page Source code
calculateCoverage Man page Source code
calculateEntropy Man page Source code
define_isoform Man page Source code
define_trailer Man page Source code
extendsTSSexons Man page Source code
extract_START_sites_from_CDSs Man page Source code
extract_STOP_sites_from_CDSs Man page Source code
filterCage Man page Source code
findMaxPeaks Man page Source code
findNewTSS Man page Source code
find_ORFs_fa Man page Source code
find_in_frame_ORFs Man page Source code
firstExonPerGroup Man page Source code
firstStartPerGroup Man page Source code
fixSeqnames Man page Source code
gSort Man page Source code
groupGRangesBy Man page Source code
lastExonEndPerGroup Man page Source code
lastExonPerGroup Man page Source code
makeExonRanks Man page Source code
makeGrlAndFilter Man page Source code
makeORFNames Man page Source code
map_to_GRanges Man page Source code
matchSeqnames Man page Source code
meta_position Man page Source code
numExonsPerGroup Man page Source code
orfs_as_IRanges Source code
parse_cigar Source code
reassignTSSbyCage Man page Source code
resize_ORF Man page Source code
seqnamesPerGroup Man page Source code
shift_footprints Man page Source code
sortPerGroup Man page Source code
start_definition Man page Source code
stop_definition Man page Source code
strandPerGroup Man page Source code
subset_coverage Man page Source code
subset_to_frame Man page Source code
subset_to_stop Man page Source code
widthPerGroup Man page Source code
window_resize Man page Source code
JokingHero/ORFik documentation built on Dec. 12, 2017, 4:13 p.m.