Files in JokingHero/ORFik
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.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
ORFik.Rproj
R/CageData_Integration.R R/GRanges_helpers.R R/ORFik.R R/ORFs_annotations.R R/ORFs_helpers.R R/RcppExports.R R/cds_helpers.R R/feature_methods.R R/find_ORFs.R R/metaplots_helpers.R R/shift_footprints.R README.md man/ORFik-package.Rd man/addFirstCdsOnLeaderEnds.Rd man/addNewTSSOnLeaders.Rd man/assign_annotations.Rd man/bedToGR.Rd man/cageFromFile.Rd man/calculateCoverage.Rd man/calculateEntropy.Rd man/define_isoform.Rd man/define_trailer.Rd man/extendsTSSexons.Rd man/extract_START_sites_from_CDSs.Rd man/extract_STOP_sites_from_CDSs.Rd man/filterCage.Rd man/findMaxPeaks.Rd man/findNewTSS.Rd man/find_ORFs_fa.Rd man/find_in_frame_ORFs.Rd man/firstExonPerGroup.Rd man/firstStartPerGroup.Rd man/fixSeqnames.Rd man/gSort.Rd man/groupGRangesBy.Rd man/lastExonEndPerGroup.Rd man/lastExonPerGroup.Rd man/makeExonRanks.Rd man/makeGrlAndFilter.Rd man/makeORFNames.Rd man/map_to_GRanges.Rd man/matchSeqnames.Rd man/meta_position.Rd man/numExonsPerGroup.Rd man/reassignTSSbyCage.Rd man/resize_ORF.Rd man/seqnamesPerGroup.Rd man/shift_footprints.Rd man/sortPerGroup.Rd man/start_definition.Rd man/stop_definition.Rd man/strandPerGroup.Rd man/subset_coverage.Rd man/subset_to_frame.Rd man/subset_to_stop.Rd man/widthPerGroup.Rd man/window_resize.Rd
src/.gitignore
src/Makevars
src/RcppExports.cpp
src/findORFsHelpers.cpp
src/findORFsHelpers.h
src/findOrfs.cpp
tests/testthat.R tests/testthat/test_CageData_Integration.R tests/testthat/test_ORFs_helpers.R tests/testthat/test_cds_helpers.R vignettes/ORFikOverview.Rmd
JokingHero/ORFik documentation built on Dec. 12, 2017, 4:13 p.m.