README.md
In KeachMurakami/fudukue:
fudukue (文机)
fukudue is a collection of R packages developed to support literate programming with R mainly for the author. This package will be used in conjunction with tidyverse and knitr.
Installation
You can install:
- the latest development version from github with
# install.packages("devtools") # if not installed
devtools::install_github("KeachMurakami/fudukue")
How to use
functions for routine operations
following functions are automatically globalized when this package is attached.
length2, sum2, sd2, mean2
na.rm = T versions
se
- calculates a non-biased standard error
%!in% (binary operator)
a %!in% b returns !(a %in% b)
consistent cross-references .pfd and .docx
fudukue implements the following verbs to generate consistent cross-references both in .pdf and .docx (described in reference_switch.R).
initialize_ref()
- setups lookup table.
update_ref()
- adds id to newly called object.
ref_eqn(), ref_fig(), ref_table()
- generate continuous numbering from the given id.
citation managements
fudukue implements the following verbs to manage bibtex-style references. .bib files for respective articles are stored as bibtex/list_bib/***.bib
update_cite()
- calls
update_abbrv() and update_bib().
update_abbrv()
- loads abbreviation lists (.csv) and generates
abbrev_XXX.bib files required for update_bib().
update_bib()
- merges all bibtex files into three files.
Full.bib: non-abbreviated full-length titlesWith.bib: abbreviated titles with periodsWithout.bib: abbreviated titles without periods
Session information
devtools::session_info()
#> Session info -------------------------------------------------------------
#> setting value
#> version R version 3.5.0 (2018-04-23)
#> system x86_64, darwin15.6.0
#> ui X11
#> language (EN)
#> collate en_US.UTF-8
#> tz Australia/Brisbane
#> date 2018-07-03
#> Packages -----------------------------------------------------------------
#> package * version date source
#> assertthat 0.2.0 2017-04-11 CRAN (R 3.5.0)
#> backports 1.1.2 2017-12-13 CRAN (R 3.5.0)
#> base * 3.5.0 2018-04-24 local
#> bindr 0.1.1 2018-03-13 CRAN (R 3.5.0)
#> bindrcpp 0.2.2 2018-03-29 CRAN (R 3.5.0)
#> broom * 0.4.4.9000 2018-06-21 Github (tidyverse/broom@2721de4)
#> cellranger 1.1.0 2016-07-27 CRAN (R 3.5.0)
#> cli 1.0.0 2017-11-05 CRAN (R 3.5.0)
#> colorspace 1.3-2 2016-12-14 CRAN (R 3.5.0)
#> compiler 3.5.0 2018-04-24 local
#> crayon 1.3.4 2017-09-16 CRAN (R 3.5.0)
#> datasets * 3.5.0 2018-04-24 local
#> devtools * 1.13.5 2018-02-18 CRAN (R 3.5.0)
#> digest 0.6.15 2018-01-28 CRAN (R 3.5.0)
#> dplyr * 0.7.5 2018-05-19 CRAN (R 3.5.0)
#> evaluate 0.10.1 2017-06-24 CRAN (R 3.5.0)
#> forcats * 0.3.0 2018-02-19 CRAN (R 3.5.0)
#> ggplot2 * 2.2.1.9000 2018-06-25 Github (tidyverse/ggplot2@1c09bae)
#> glue 1.2.0 2017-10-29 CRAN (R 3.5.0)
#> graphics * 3.5.0 2018-04-24 local
#> grDevices * 3.5.0 2018-04-24 local
#> grid 3.5.0 2018-04-24 local
#> gtable 0.2.0 2016-02-26 CRAN (R 3.5.0)
#> haven 1.1.1 2018-01-18 CRAN (R 3.5.0)
#> hms 0.4.2 2018-03-10 CRAN (R 3.5.0)
#> htmltools 0.3.6 2017-04-28 CRAN (R 3.5.0)
#> httr 1.3.1 2017-08-20 CRAN (R 3.5.0)
#> jsonlite 1.5 2017-06-01 CRAN (R 3.5.0)
#> knitr * 1.20 2018-02-20 CRAN (R 3.5.0)
#> lattice 0.20-35 2017-03-25 CRAN (R 3.5.0)
#> lazyeval 0.2.1 2017-10-29 CRAN (R 3.5.0)
#> lubridate 1.7.4 2018-04-11 CRAN (R 3.5.0)
#> magrittr * 1.5 2014-11-22 CRAN (R 3.5.0)
#> MASS * 7.3-49 2018-02-23 CRAN (R 3.5.0)
#> memoise 1.1.0 2017-04-21 CRAN (R 3.5.0)
#> methods * 3.5.0 2018-04-24 local
#> modelr 0.1.2 2018-05-11 cran (@0.1.2)
#> munsell 0.4.3 2016-02-13 CRAN (R 3.5.0)
#> nlme 3.1-137 2018-04-07 CRAN (R 3.5.0)
#> pillar 1.2.3 2018-05-25 cran (@1.2.3)
#> pkgconfig 2.0.1 2017-03-21 CRAN (R 3.5.0)
#> plyr 1.8.4 2016-06-08 CRAN (R 3.5.0)
#> purrr * 0.2.5 2018-05-29 CRAN (R 3.5.0)
#> R6 2.2.2 2017-06-17 CRAN (R 3.5.0)
#> Rcpp 0.12.17 2018-05-18 cran (@0.12.17)
#> readr * 1.1.1 2017-05-16 CRAN (R 3.5.0)
#> readxl 1.1.0 2018-04-20 CRAN (R 3.5.0)
#> reshape2 1.4.3 2017-12-11 CRAN (R 3.5.0)
#> rlang 0.2.1 2018-05-30 cran (@0.2.1)
#> rmarkdown 1.10 2018-06-11 cran (@1.10)
#> rprojroot 1.3-2 2018-01-03 CRAN (R 3.5.0)
#> rstudioapi 0.7 2017-09-07 CRAN (R 3.5.0)
#> rvest 0.3.2 2016-06-17 CRAN (R 3.5.0)
#> scales 0.5.0 2017-08-24 CRAN (R 3.5.0)
#> stats * 3.5.0 2018-04-24 local
#> stringi 1.2.2 2018-05-02 cran (@1.2.2)
#> stringr * 1.3.1 2018-05-10 cran (@1.3.1)
#> tibble * 1.4.2 2018-01-22 CRAN (R 3.5.0)
#> tidyr * 0.8.1 2018-05-18 cran (@0.8.1)
#> tidyselect 0.2.4 2018-02-26 CRAN (R 3.5.0)
#> tidyverse * 1.2.1 2017-11-14 CRAN (R 3.5.0)
#> tools 3.5.0 2018-04-24 local
#> utils * 3.5.0 2018-04-24 local
#> withr 2.1.2 2018-03-15 CRAN (R 3.5.0)
#> xml2 1.2.0 2018-01-24 CRAN (R 3.5.0)
#> yaml 2.1.19 2018-05-01 cran (@2.1.19)
KeachMurakami/fudukue documentation built on May 22, 2019, 12:40 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
fudukue (文机)
fukudue is a collection of R packages developed to support literate programming with R mainly for the author. This package will be used in conjunction with tidyverse and knitr.
Installation
You can install:
- the latest development version from github with
# install.packages("devtools") # if not installed
devtools::install_github("KeachMurakami/fudukue")
How to use
functions for routine operations
following functions are automatically globalized when this package is attached.
length2,sum2,sd2,mean2na.rm = Tversions
se- calculates a non-biased standard error
%!in%(binary operator)a %!in% breturns!(a %in% b)
consistent cross-references .pfd and .docx
fudukue implements the following verbs to generate consistent cross-references both in .pdf and .docx (described in reference_switch.R).
initialize_ref()- setups lookup table.
update_ref()- adds id to newly called object.
ref_eqn(), ref_fig(), ref_table()- generate continuous numbering from the given id.
citation managements
fudukue implements the following verbs to manage bibtex-style references. .bib files for respective articles are stored as bibtex/list_bib/***.bib
update_cite()- calls
update_abbrv()andupdate_bib().
- calls
update_abbrv()- loads abbreviation lists (.csv) and generates
abbrev_XXX.bibfiles required forupdate_bib().
- loads abbreviation lists (.csv) and generates
update_bib()- merges all bibtex files into three files.
Full.bib: non-abbreviated full-length titlesWith.bib: abbreviated titles with periodsWithout.bib: abbreviated titles without periods
- merges all bibtex files into three files.
Session information
devtools::session_info()
#> Session info -------------------------------------------------------------
#> setting value
#> version R version 3.5.0 (2018-04-23)
#> system x86_64, darwin15.6.0
#> ui X11
#> language (EN)
#> collate en_US.UTF-8
#> tz Australia/Brisbane
#> date 2018-07-03
#> Packages -----------------------------------------------------------------
#> package * version date source
#> assertthat 0.2.0 2017-04-11 CRAN (R 3.5.0)
#> backports 1.1.2 2017-12-13 CRAN (R 3.5.0)
#> base * 3.5.0 2018-04-24 local
#> bindr 0.1.1 2018-03-13 CRAN (R 3.5.0)
#> bindrcpp 0.2.2 2018-03-29 CRAN (R 3.5.0)
#> broom * 0.4.4.9000 2018-06-21 Github (tidyverse/broom@2721de4)
#> cellranger 1.1.0 2016-07-27 CRAN (R 3.5.0)
#> cli 1.0.0 2017-11-05 CRAN (R 3.5.0)
#> colorspace 1.3-2 2016-12-14 CRAN (R 3.5.0)
#> compiler 3.5.0 2018-04-24 local
#> crayon 1.3.4 2017-09-16 CRAN (R 3.5.0)
#> datasets * 3.5.0 2018-04-24 local
#> devtools * 1.13.5 2018-02-18 CRAN (R 3.5.0)
#> digest 0.6.15 2018-01-28 CRAN (R 3.5.0)
#> dplyr * 0.7.5 2018-05-19 CRAN (R 3.5.0)
#> evaluate 0.10.1 2017-06-24 CRAN (R 3.5.0)
#> forcats * 0.3.0 2018-02-19 CRAN (R 3.5.0)
#> ggplot2 * 2.2.1.9000 2018-06-25 Github (tidyverse/ggplot2@1c09bae)
#> glue 1.2.0 2017-10-29 CRAN (R 3.5.0)
#> graphics * 3.5.0 2018-04-24 local
#> grDevices * 3.5.0 2018-04-24 local
#> grid 3.5.0 2018-04-24 local
#> gtable 0.2.0 2016-02-26 CRAN (R 3.5.0)
#> haven 1.1.1 2018-01-18 CRAN (R 3.5.0)
#> hms 0.4.2 2018-03-10 CRAN (R 3.5.0)
#> htmltools 0.3.6 2017-04-28 CRAN (R 3.5.0)
#> httr 1.3.1 2017-08-20 CRAN (R 3.5.0)
#> jsonlite 1.5 2017-06-01 CRAN (R 3.5.0)
#> knitr * 1.20 2018-02-20 CRAN (R 3.5.0)
#> lattice 0.20-35 2017-03-25 CRAN (R 3.5.0)
#> lazyeval 0.2.1 2017-10-29 CRAN (R 3.5.0)
#> lubridate 1.7.4 2018-04-11 CRAN (R 3.5.0)
#> magrittr * 1.5 2014-11-22 CRAN (R 3.5.0)
#> MASS * 7.3-49 2018-02-23 CRAN (R 3.5.0)
#> memoise 1.1.0 2017-04-21 CRAN (R 3.5.0)
#> methods * 3.5.0 2018-04-24 local
#> modelr 0.1.2 2018-05-11 cran (@0.1.2)
#> munsell 0.4.3 2016-02-13 CRAN (R 3.5.0)
#> nlme 3.1-137 2018-04-07 CRAN (R 3.5.0)
#> pillar 1.2.3 2018-05-25 cran (@1.2.3)
#> pkgconfig 2.0.1 2017-03-21 CRAN (R 3.5.0)
#> plyr 1.8.4 2016-06-08 CRAN (R 3.5.0)
#> purrr * 0.2.5 2018-05-29 CRAN (R 3.5.0)
#> R6 2.2.2 2017-06-17 CRAN (R 3.5.0)
#> Rcpp 0.12.17 2018-05-18 cran (@0.12.17)
#> readr * 1.1.1 2017-05-16 CRAN (R 3.5.0)
#> readxl 1.1.0 2018-04-20 CRAN (R 3.5.0)
#> reshape2 1.4.3 2017-12-11 CRAN (R 3.5.0)
#> rlang 0.2.1 2018-05-30 cran (@0.2.1)
#> rmarkdown 1.10 2018-06-11 cran (@1.10)
#> rprojroot 1.3-2 2018-01-03 CRAN (R 3.5.0)
#> rstudioapi 0.7 2017-09-07 CRAN (R 3.5.0)
#> rvest 0.3.2 2016-06-17 CRAN (R 3.5.0)
#> scales 0.5.0 2017-08-24 CRAN (R 3.5.0)
#> stats * 3.5.0 2018-04-24 local
#> stringi 1.2.2 2018-05-02 cran (@1.2.2)
#> stringr * 1.3.1 2018-05-10 cran (@1.3.1)
#> tibble * 1.4.2 2018-01-22 CRAN (R 3.5.0)
#> tidyr * 0.8.1 2018-05-18 cran (@0.8.1)
#> tidyselect 0.2.4 2018-02-26 CRAN (R 3.5.0)
#> tidyverse * 1.2.1 2017-11-14 CRAN (R 3.5.0)
#> tools 3.5.0 2018-04-24 local
#> utils * 3.5.0 2018-04-24 local
#> withr 2.1.2 2018-03-15 CRAN (R 3.5.0)
#> xml2 1.2.0 2018-01-24 CRAN (R 3.5.0)
#> yaml 2.1.19 2018-05-01 cran (@2.1.19)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.