tests/1k/test.r
In KonradZych/phenotypes2genotypes: High-Throughput Generation of Genetic Markers and Maps from Molecular Phenotypes for Crosses Between Inbred Strains
setwd("~/Github/phenotypes2genotypes/tests/1k")
library(pheno2geno)
set.seed(1234)
founders_groups <- c(0,0,0,0,0,0,1,1,1,1,1,1,1,1)
population <- read.population(founders_groups=founders_groups, populationType="riself", read_mode="HT", verbose=TRUE, debugMode=2, sliceSize=10000, transformations="nothing",threshold=0.01)
populationN <- generate.biomarkers(population, threshold= 1.0e-09, overlapInd = 15, margin=45, p.prob=0.8, verbose=T, debug=2)
populationN <- scan.qtls(populationN)
crossN <- cross.saturate(populationN, flagged="remove", verbose=T,threshold=15)
KonradZych/phenotypes2genotypes documentation built on May 30, 2019, 2:45 p.m.
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setwd("~/Github/phenotypes2genotypes/tests/1k")
library(pheno2geno)
set.seed(1234)
founders_groups <- c(0,0,0,0,0,0,1,1,1,1,1,1,1,1)
population <- read.population(founders_groups=founders_groups, populationType="riself", read_mode="HT", verbose=TRUE, debugMode=2, sliceSize=10000, transformations="nothing",threshold=0.01)
populationN <- generate.biomarkers(population, threshold= 1.0e-09, overlapInd = 15, margin=45, p.prob=0.8, verbose=T, debug=2)
populationN <- scan.qtls(populationN)
crossN <- cross.saturate(populationN, flagged="remove", verbose=T,threshold=15)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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