Files in LauraPS1/TFEA.ChIP
Analyze Transcription Factor Enrichment
DESCRIPTION
NAMESPACE
NEWS
R/All-functions.R
R/datasets_doc.R
R/zzz.R
data/ARNT.metadata.rda
data/ARNT.peaks.bed.rda
data/ChIPDB.rda
data/DnaseHS_db.rda
data/Entrez.gene.IDs.rda
data/GSEA.result.rda
data/Genes.Upreg.rda
data/MetaData.rda
data/datalist
data/gr.list.rda
data/hypoxia.rda
data/hypoxia_DESeq.rda
data/log2.FC.rda
inst/CITATION
inst/unitTests/test_TFEA.ChIP.R
man/ARNT.metadata.Rd
man/ARNT.peaks.bed.Rd
man/ChIPDB.Rd
man/DnaseHS_db.Rd
man/Entrez.gene.IDs.Rd
man/GSEA.result.Rd
man/GSEA_ESpermutations.Rd
man/GSEA_EnrichmentScore.Rd
man/GSEA_run.Rd
man/GeneID2entrez.Rd
man/Genes.Upreg.Rd
man/MetaData.Rd
man/Select_genes.Rd
man/contingency_matrix.Rd
man/getCMstats.Rd
man/get_LFC_bar.Rd
man/get_chip_index.Rd
man/gr.list.Rd
man/highlight_TF.Rd
man/hypoxia.Rd
man/hypoxia_DESeq.Rd
man/log2.FC.Rd
man/makeChIPGeneDB.Rd
man/matrixDB_to_listDB.Rd
man/plot_CM.Rd
man/plot_ES.Rd
man/plot_RES.Rd
man/preprocessInputData.Rd
man/rankTFs.Rd
man/set_user_data.Rd
man/txt2GR.Rd
tests/runTests.R
vignettes/CMplot1.png
vignettes/CMplot2.png
vignettes/GSEAplot1.png
vignettes/GSEAplot2.png
vignettes/TFEA.ChIP.Rmd
