countUni | countUni |
drawMA | Draw MA, volcano plot |
enrichmentFactorForDataFrame | CMAP Style Enrichment Calculation |
enrobj2Matrix | Enrichment object list to matrix |
ent2sym | Gene ID mapper for entrez and symbol |
extractGeneList | Gene list extraction from result |
geneCount | Count number of genes in geneList |
Gen_enrichment | Gene list pathway analysis by hypergeometric test |
getEnrichmentFactor | Calculate Enrichment factor |
getOverlapDF | Get pairwise overlap significance for a list |
harmean | Harmonic Mean |
hypergeoTest | Hypergeometric test |
hypergeoTestForGeneset | Hypergeometric test for gmt style list |
Lazy2-package | Lazy2: Lazy Package |
LazygeneInfo | Human Gene Information |
pipe | Pipe operator |
plotEnrichment2 | plotEnrichment2 |
readGMT | readGMT |
removeAmbigDEGs | Remove ambiguous DEGs |
removeNAs | removeNAs |
tanimotoCoef | Tanimoto coefficients |
theme_transparent3 | Transparent theme for ggplot |
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