assaysList2Dataframe: Assays list to data.frame

Description Usage Arguments Details

Description

Used by getAssaysDataframe

Usage

1
assaysList2Dataframe(assays, studyData, na.vals = c("na"))

Arguments

assays

Assays in a list as returned by getAssaysForStudy

studyData

Output from getAssaysList

Details

This function also cleans up NA values in the assay data. These NA values are usually denoted by 'na' as a character and this screws up the rbind function. It might not be immediately obvious that this function also cleans data but if the data is not cleaned before converting to a data.frame we'll have issues with character values being replaced by numeric values that are hard to trace back.


Lodewic/accomodation-recommendation documentation built on Oct. 27, 2018, 12:12 a.m.