getAssaysDataframe: Get all study assays as a data.frame

Description Usage Arguments Value See Also

Description

The API function getMeasurementDataForAssay returns assays in a list, parsed from JSON format. This list can be converted to a standardized data.frame with 8 columns with standard column names. This data.frame contains all study assay data in a long format. All measurements done in the study are included here, but descriptions/features of these measurements and the subjects are not included in this data.

Usage

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getAssaysDataframe(assays, na.vals = c("na"), progress = FALSE,
  incTotal = 1/4)

Arguments

assays

Assays in a list as returned by getAssaysForStudy

na.vals

Character vectors of values that should be set to NA. (default c("na"))

progress

(Default FALSE) Logical whether to include progress (used in Shiny dashboard)

incTotal

If progress=TRUE then this gives the total progress increment

Value

A long-format data.frame of all the assay data

See Also

Other dbnp data processing: cleanAssays, findCharacters, getAssaySubjectsDataframe, getAssaysList, getFeaturesDataframe, getStudyToken, getSubjectsDataframe, missingSubjects, nestAssays, relevelTime, studiesToDataframe, summariseAssayValue, summariseAssays


Lodewic/accomodation-recommendation documentation built on Oct. 27, 2018, 12:12 a.m.