getAssaysList: Get all study assays as a list

Description Usage Arguments Value See Also

Description

The API function getMeasurementDataForAssay returns assays in a list, parsed from JSON format. This list can be converted to a standardized data.frame with 8 columns with standard column names. This data.frame contains all study assay data in a long format. All measurements done in the study are included here, but descriptions/features of these measurements and the subjects are not included in this data.#'

Usage

1
getAssaysList(assays, na.vals = c("na"), progress = FALSE, incTotal = 1/4)

Arguments

assays

Assays in a list as returned by getAssaysForStudy

progress

(Default FALSE) Logical whether to include progress (used in Shiny dashboard)

incTotal

If progress=TRUE then this gives the total progress increment

Value

A long-format data.frame of all the assay data

See Also

Other dbnp data processing: cleanAssays, findCharacters, getAssaySubjectsDataframe, getAssaysDataframe, getFeaturesDataframe, getStudyToken, getSubjectsDataframe, missingSubjects, nestAssays, relevelTime, studiesToDataframe, summariseAssayValue, summariseAssays


Lodewic/accomodation-recommendation documentation built on Oct. 27, 2018, 12:12 a.m.