API for MASHUOA/HiTMaP
A collection of tools for imaging MS data processing
| Global functions | |
|---|---|
| Advanced_building | Source code |
| BuildElement | Source code |
| BuildElement_1 | Source code |
| Build_adduct_list | Source code |
| Cardinal | Source code |
| Cardinal_cluster_classification | Source code |
| Cardinal_old | Source code |
| Cardinal_utilities | Source code |
| Center_of_gravity_and_contour | Source code |
| Cleavage_rules_fun | Man page |
| Cleave_noname | Source code |
| ConvertPeptide | Source code |
| ConvertPeptide.2 | Source code |
| Cpd_spectrum_match_rescore | Source code |
| Ctypeof | Source code |
| Do_PMF_search | Source code |
| FDR_cutoff_plot | Source code |
| FDR_cutoff_plot_cpd | Source code |
| FDR_cutoff_plot_protein | Source code |
| Feature_summary_all_files | Source code |
| Generate_HMDBIDS | Source code |
| Generatespectrum_workflow_maldiquant | Source code |
| HiTMaP_GUI | Man page Source code |
| ID_summary_analysis | Source code |
| IMS_analysis_fun | Source code |
| IMS_analysis_fun_2 | Source code |
| IMS_data_process | Source code |
| Imzml_temp_fix | Source code |
| Kernel_convolution | Source code Source code |
| Load_Cardinal_imaging | Source code |
| Load_IMS_combine | Source code |
| Load_IMS_decov_combine | Source code |
| META_pathway_Whole_Picture | Source code |
| META_pathway_Whole_Picture_discovery_mode | Source code |
| META_pathway_ion_image | Source code |
| META_pathway_ion_image_cardinal | Source code |
| META_pathway_search | Source code |
| MassSpecWavelet_fun | Source code |
| Mass_defect_plot | Source code |
| Meta_feature_list_fun | Man page Source code |
| PCA_ncomp_selection | Source code |
| PMFresultindex | Source code |
| PMFsum | Source code |
| PMFsum_para | Source code |
| PRM_target_slt | Source code |
| Parallel.OS | Source code |
| Parse_rotation | Source code |
| Pathway_overview_graphite | Source code |
| Peptide_Feature_Summary | Source code |
| Peptide_Feature_Summary_array | Source code |
| Peptide_Feature_Summary_data_table | Source code |
| Peptide_Feature_Summary_data_table_fast | Source code |
| Peptide_Feature_Summary_data_table_para | Source code |
| Peptide_Feature_Summary_fast | Source code |
| Peptide_Feature_UNIQUE | Source code |
| Peptide_Summary_para | Source code |
| Peptide_feature_summary_all_files | Source code |
| Peptide_feature_summary_all_files_new | Source code |
| Peptide_modification | Man page Source code |
| Peptide_regions_Summary_fun | Source code |
| PlotPMFsig | Source code |
| Plot_Ion_image_Png | Source code |
| Plot_Ion_image_Png2 | Source code |
| Plot_Ion_image_Png3 | Source code |
| Plot_PMF_all | Source code |
| Plot_cpd_spectrum_match | Source code |
| Plot_cpd_spectrum_match_sig | Source code |
| Preprocessing_segmentation | Source code |
| Protein_feature_list_fun | Man page Source code |
| Protein_feature_list_table_import | Source code Source code |
| Protein_feature_list_table_import_fastaref | Source code |
| Protein_feature_summary_all_files_new | Source code |
| RUN_imagine_workflow | Source code |
| SCORE_CPD | Source code |
| SCORE_PMF | Source code |
| Spectrum_scoring | Source code |
| THERO_IONS_peptides | Source code |
| Whole_Picture_Cluster_mode | Source code |
| WorkingDir | Source code Source code |
| affine_grid | Source code |
| annotate_PSEA | Source code |
| annotate_cpd | Source code |
| atomes.to.formula | Source code |
| autoStopCluster | Source code |
| cleave_para | Source code |
| cluster_image_cardinal | Source code |
| cluster_image_grid | Man page Source code |
| convert_peptide_adduct | Source code |
| convert_peptide_adduct_list | Source code |
| convert_peptide_fixmod | Source code |
| convert_peptide_modsymbol | Source code Source code |
| data_test_rename | Source code |
| export_pixel_level_data | Source code |
| fastafile_utils | Source code |
| fetch_ID_from_DB | Source code |
| getMonomass | Source code |
| getMonomass_para | Source code |
| get_atoms | Man page Source code |
| get_coord_info | Source code |
| get_formula_from_atom | Source code |
| get_pro_acc | Source code |
| get_protein_from_interest_desc | Source code |
| grid.ftable | Man page |
| imaging_Spatial_Quant | Man page Source code |
| imaging_default_parameter | Source code |
| imaging_identification | Man page Source code |
| imaging_identification_target | Source code |
| initialization | Source code |
| intensity.colors_customize | Source code |
| intensity.colors_customize_mono | Source code |
| intensity_sum_para | Source code |
| isopattern_ppm_filter | Source code |
| isopattern_ppm_filter_peaklist | Source code Source code |
| isopattern_ppm_filter_peaklist_dep | Source code |
| isopattern_ppm_filter_peaklist_par | Source code |
| load_pixel_label | Source code |
| memory_profile | Source code |
| merge_atoms | Man page Source code |
| metwork_cardinal | Source code |
| metwork_maldiquant | Source code |
| mummichog.lib.mod | Source code |
| nice_file_create | Source code |
| parentIonMasslist | Source code |
| peptide_map_to_protein | Source code |
| percent | Source code |
| pick.peaks | Source code |
| plotRanges | Source code |
| plot_cpd_matching_score | Source code |
| plot_matching_score | Source code |
| plot_matching_score_cpd | Source code |
| protein_scoring | Source code |
| quiet | Source code Source code |
| radius_segmentation | Source code |
| radius_segmentation_dist | Source code |
| rank_mz_feature | Source code |
| recheck_peptide_score | Source code |
| remove_cpd_score_outlier | Source code |
| remove_pep_score_outlier | Source code |
| resolve_multi_modes | Source code |
| rotateMSI | Source code |
| rotate_image | Source code |
| run_spatial_quant_workflow | Source code |
| searchPMF | Source code |
| searchPMF_data_frame | Source code |
| searchPMF_para | Source code |
| seq.cov | Source code |
| seq.ppm | Source code |
| setworkdir | Source code |
| simple_ion_image | Source code |
| sort_run_msi | Source code |
| string_slice | Source code |
| testcolume | Source code |
| vendiagram | Source code |
| virtual_segmentation | Source code |
| windows_filename | Source code |
| windows_filename2 | Source code |
