API for MRCIEU/TwoSampleMR
Two Sample MR functions and interface to MR Base database

Global functions
Isq Source code Source code Source code
PM Source code
allele_frequency Man page Source code
available_outcomes Man page Source code
available_outcomes_mysql Man page Source code
blank_plot Source code
check_mrbase_access Man page Source code
check_palindromic Source code
check_password Man page Source code
check_units Source code
cleanup_outcome_data Man page Source code
clump_data Man page Source code
combine_all_mrresults Man page Source code
combine_data Man page Source code
contingency Man page Source code
convert_outcome_to_exposure Man page Man page Source code Source code
create_ids Source code
create_label Man page Source code
dat_to_MRInput Man page Source code
default_parameters Man page Source code
directionality_test Man page Source code
enrichment Man page Source code
enrichment_method_list Man page Source code
ensembl_get_position Source code
extract_instruments Man page Source code
extract_outcome_data Man page Source code
extract_outcome_data2 Man page Source code
extract_outcome_data_internal Source code
extract_outcome_data_mysql Man page Source code
extract_outcome_data_using_get Man page Source code
fishers_combined_test Man page Source code
flip_alleles Source code
forest_plot Man page Source code
forest_plot_1_to_many Man page Source code
forest_plot_addcol Source code
forest_plot_basic Man page Source code
forest_plot_basic2 Man page Source code
forest_plot_names Source code
forest_plot_names2 Source code
format_1_to_many Man page Source code
format_aries_mqtl Man page Source code
format_d Man page Source code
format_data Man page Source code
format_gtex_eqtl Man page Source code
format_gwas_catalog Man page Source code
format_metab_qtls Man page Source code
format_mr_results Man page Source code
format_proteomic_qtls Man page Source code
fromJSON_safe Source code
generate_odds_ratios Man page Source code
get_metrics Source code
get_mrbase_access_token Man page Source code
get_mrbase_status Man page Source code
get_p_from_r2n Man page Source code
get_password Man page Source code
get_plink_exe Source code
get_population_allele_frequency Man page Source code
get_r_from_lor Man page Source code
get_r_from_pn Man page Source code
get_r_from_pn_less_accurate Source code
get_rf_method Source code
get_rsq Source code
get_se Man page Source code
get_snp_positions_biomart Source code
harmonise_11 Source code
harmonise_12 Source code
harmonise_21 Source code
harmonise_22 Source code
harmonise_cleanup_variables Source code
harmonise_data Man page Source code
harmonise_function Man page Source code
harmonise_function_refactored Source code
harmonise_ld_dat Source code
harmonise_make_snp_effects_positive Source code
knit_report Man page Source code
ld_matrix Man page Source code
ld_pruning_api Man page Source code
linreg Source code
mr Man page Source code
mr_density_plot Man page Source code
mr_egger_regression Man page Source code
mr_egger_regression_bootstrap Man page Source code
mr_forest_plot Man page Source code
mr_forest_plot_grouped Man page Source code
mr_funnel_plot Man page Source code
mr_heterogeneity Man page Source code
mr_ivw Man page Source code
mr_ivw_fe Man page Source code
mr_ivw_mre Man page Source code
mr_ivw_radial Man page Source code
mr_leaveoneout Man page Source code
mr_leaveoneout_plot Man page Source code
mr_median Man page Source code
mr_meta_fixed Man page Source code
mr_meta_fixed_simple Man page Source code
mr_meta_random Man page Source code
mr_method_list Man page Source code
mr_mode Man page Source code
mr_moe Man page Source code
mr_penalised_weighted_median Man page Source code
mr_pleiotropy_test Man page Source code
mr_raps Man page Source code
mr_report Man page Source code
mr_rucker Man page Source code
mr_rucker_bootstrap Man page Source code
mr_rucker_cooksdistance Man page Source code
mr_rucker_internal Source code
mr_rucker_jackknife Man page Source code
mr_rucker_jackknife_internal Source code
mr_scatter_plot Man page Source code
mr_sign Man page Source code
mr_simple_median Man page Source code
mr_simple_mode Man page Source code
mr_simple_mode_nome Man page Source code
mr_singlesnp Man page Source code
mr_steiger Man page Source code
mr_steiger2 Man page Source code
mr_two_sample_ml Man page Source code
mr_uwr Man page Source code
mr_wald_ratio Man page Source code
mr_weighted_median Man page Source code
mr_weighted_mode Man page Source code
mr_weighted_mode_nome Man page Source code
multivariable_mr Man page Source code
mv_basic Man page Source code
mv_extract_exposures Man page Source code
mv_harmonise_data Man page Source code
mv_ivw Man page Source code
mv_multiple Man page Source code
mv_residual Man page Source code
onLoad Source code
plink_clump Source code
power.prune Man page Source code
random_string Source code
read_exposure_data Man page Source code
read_outcome_data Man page Source code
revoke_mrbase_access_token Man page Source code
run_mr Man page Source code
run_mr_presso Man page Source code
sanitise_string Source code
set_password Man page Source code
simple_cap Man page Source code
size.prune Man page Source code
sort_1_to_many Man page Source code
split_exposure Man page Source code
split_outcome Man page Source code
steiger_filtering Man page Source code
steiger_filtering_internal Source code
steiger_sensitivity Man page Source code
subset_on_method Man page Source code
system_metrics Source code
test_r_from_pn Source code
toggle_api Man page Source code
toggle_dev Man page Source code
trim Man page Source code
ucsc_get_position Source code
upload_file_to_api Man page Source code
weighted_median Man page Source code Source code
weighted_median_bootstrap Man page Source code
MRCIEU/TwoSampleMR documentation built on Oct. 1, 2018, 9:17 p.m.