API for MRCIEU/TwoSampleMR
Two Sample MR Functions and Interface to MR Base Database

Global functions
%>% Man page
.onAttach Source code
Isq Man page Source code
PM Source code
TwoSampleMR Man page
TwoSampleMR-package Man page
add_metadata Man page Source code
add_rsq Man page Source code
add_rsq_one Source code
allele_frequency Man page Source code
available_outcomes Man page Source code
blank_plot Source code
check_palindromic Source code
check_required_columns Source code
check_units Source code
cleanup_outcome_data Man page Source code
clump_data Man page Source code
combine_all_mrresults Man page Source code
combine_data Man page Source code
compareNA Source code
contingency Man page Source code
convert_outcome_to_exposure Man page Source code
create_ids Source code
create_label Man page Source code
dat_to_MRInput Man page Source code
dat_to_RadialMR Man page Source code
default_parameters Man page Source code
directionality_test Man page Source code
effective_n Man page Source code
enrichment Man page Source code
enrichment_method_list Man page Source code
estimate_trait_sd Man page Source code
extract_instruments Man page Source code
extract_outcome_data Man page Source code
extract_outcome_data_internal Source code
fishers_combined_test Man page Source code
flip_alleles Source code
forest_plot Man page
forest_plot_1_to_many Man page
forest_plot_basic Man page Source code
forest_plot_basic2 Man page Source code
format_1_to_many Man page Source code
format_aries_mqtl Man page Source code
format_d Man page Source code
format_data Man page Source code
format_gtex_eqtl Man page Source code
format_gwas_catalog Man page Source code
format_metab_qtls Man page Source code
format_mr_results Man page Source code
format_proteomic_qtls Man page Source code
generate_odds_ratios Man page Source code
get_p_from_r2n Man page Source code
get_population_allele_frequency Man page Source code
get_r_from_bsen Man page Source code
get_r_from_lor Man page Source code
get_r_from_pn Man page Source code
get_r_from_pn_less_accurate Source code
get_rsq Source code
get_se Man page Source code
harmonise Source code
harmonise_11 Source code
harmonise_12 Source code
harmonise_21 Source code
harmonise_22 Source code
harmonise_cleanup_variables Source code
harmonise_data Man page Source code
harmonise_ld_dat Man page Source code
harmonise_make_snp_effects_positive Source code
ids_new_to_old Source code
ids_new_to_old2 Source code
ids_old_to_new Source code
ids_old_to_new2 Source code
knit_report Man page Source code
ld_matrix Man page Source code
ldsc_h2 Man page Source code
ldsc_h2_internal Man page Source code
ldsc_rg Man page
ldsc_rg_internal Man page Source code
linreg Source code
make_dat Man page Source code
mr Man page Source code
mr_all Source code
mr_density_plot Man page Source code
mr_egger_regression Man page Source code
mr_egger_regression_bootstrap Man page Source code
mr_forest_plot Man page Source code
mr_forest_plot_grouped Man page Source code
mr_funnel_plot Man page Source code
mr_heterogeneity Man page Source code
mr_ivw Man page Source code
mr_ivw_fe Man page Source code
mr_ivw_mre Man page Source code
mr_ivw_radial Man page Source code
mr_leaveoneout Man page Source code
mr_leaveoneout_plot Man page Source code
mr_mean Source code
mr_mean_egger Source code
mr_mean_ivw Source code
mr_median Man page Source code
mr_meta_fixed Man page Source code
mr_meta_fixed_simple Man page Source code
mr_meta_random Man page Source code
mr_method_list Man page Source code
mr_mode Man page Source code
mr_mode_broken Source code
mr_moe Man page Source code
mr_moe_single Source code
mr_penalised_weighted_median Man page Source code
mr_pleiotropy_test Man page Source code
mr_raps Man page Source code
mr_report Man page Source code
mr_rucker Man page Source code
mr_rucker_bootstrap Man page Source code
mr_rucker_cooksdistance Man page Source code
mr_rucker_internal Source code
mr_rucker_jackknife Man page Source code
mr_rucker_jackknife_internal Source code
mr_scatter_plot Man page Source code
mr_sign Man page Source code
mr_simple_median Man page Source code
mr_simple_mode Man page Source code
mr_simple_mode_nome Man page Source code
mr_singlesnp Man page Source code
mr_steiger Man page Source code
mr_steiger2 Man page Source code
mr_two_sample_ml Man page Source code
mr_uwr Man page Source code
mr_wald_ratio Man page Source code
mr_weighted_median Man page Source code
mr_weighted_mode Man page Source code
mr_weighted_mode_nome Man page Source code
mr_wrapper Man page Source code
mr_wrapper_single Source code
mv_basic Man page Source code
mv_extract_exposures Man page Source code
mv_extract_exposures_local Man page Source code
mv_harmonise_data Man page Source code
mv_ivw Man page Source code
mv_lasso_feature_selection Man page Source code
mv_multiple Man page Source code
mv_residual Man page Source code
mv_subset Man page Source code
power_prune Man page Source code
random_string Source code
read_exposure_data Man page Source code
read_outcome_data Man page Source code
recode_indels_12 Source code
recode_indels_21 Source code
recode_indels_22 Source code
run_mr_presso Man page Source code
run_mrmix Man page Source code
sanitise_string Source code
simple_cap Man page Source code
size.prune Man page Source code
sort_1_to_many Man page Source code
split_exposure Man page Source code
split_outcome Man page Source code
standardise_units Man page Source code
steiger_filtering Man page Source code
steiger_filtering_internal Source code
steiger_sensitivity Man page Source code
subset_on_method Man page Source code
system_metrics Source code
test_r_from_pn Source code
trim Man page Source code
weighted_median Man page Source code Source code
weighted_median_bootstrap Man page Source code
MRCIEU/TwoSampleMR documentation built on March 26, 2024, 6:11 a.m.